About   Help   FAQ
Mapping Data
  • Experiment
    TEXT-Physical Mapping
  • Chromosome
  • Reference
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • ID
GeneAlleleAssay TypeDescription
2010204K13Rik assembly
Tceal1 assembly
Uxt assembly
Tceal3 assembly
Arhgap36 assembly
Slc6a14 assembly
Xiap assembly
Tceal7 assembly
Apoo assembly
Atp1b4 assembly
Haus7 assembly
Ikbkg assembly
Ogt assembly
Srpx2 assembly
Lage3 assembly
Prr32 assembly
Nhsl2 assembly
1110065H08Rik assembly
Sh3bgrl assembly
Klhl13 assembly
Sash3 assembly
Rnf128 assembly
C1galt1c1 assembly
Fundc1 assembly
Eif1ax assembly
Mcts1 assembly
Tceal6 assembly
Zcchc18 assembly
1500032P08Rik assembly
Mecp2 assembly
Fthl17a assembly
Morc4 assembly
Htatsf1 assembly
1600025M17Rik assembly
Map7d2 assembly
Cypt3 assembly
Tcp11x2 assembly
1700010D01Rik assembly
Fam236e assembly
H2al1m assembly
H2bw2 assembly
Btbd35f1 assembly
Fam236c assembly
Tslrn1 assembly
1700020N15Rik assembly
Ppp1r2-ps7 assembly
Tex13a assembly
Ctag2 assembly
Dmrtc1a assembly
1700036O09Rik assembly
Cldn34b2 assembly
Rnf138rt1 assembly
H2ap assembly
Wdr13 assembly
Actrt1 assembly
Vsig1 assembly
Samt3 assembly
Magea14 assembly
1700084M14Rik assembly
Cypt15-ps assembly
Dusp21 assembly
1700094I16Rik assembly
1700111N16Rik assembly
1700121L16Rik assembly
Rhox13 assembly
Sh3kbp1 assembly
1700125M20Rik assembly
Tmsb15a assembly
Mospd1 assembly
2810403D21Rik assembly
Las1l assembly
1810030O07Rik assembly
Fundc1 assembly
Fam3a assembly
Trappc2 assembly
Jpx assembly
Glod5 assembly
Prrg1 assembly
2010106E10Rik assembly
Mageh1 assembly
Rap2c assembly
2010204K13Rik assembly
2010308F09Rik assembly
Nbdy assembly
Gprasp1 assembly
Dnase1l1 assembly
Tsr2 assembly
Mdrl assembly
Asb12 assembly
Pir assembly
Slc25a53 assembly
2310058F05Rik assembly
Pof1b assembly
Bclaf3 assembly
Pdzd11 assembly
Mageb16 assembly
Mospd2 assembly
Jpx assembly
Rbm3 assembly
Htatsf1 assembly
Pdk3 assembly
Chmp1b2 assembly
2610007B07Rik assembly
Hdac8 assembly
Stk26 assembly
Nkap assembly
Ribc1 assembly
Pbdc1 assembly
Vma21 assembly
Wdr44 assembly
2610510C17Rik assembly
Rps6ka6 assembly
Magt1 assembly
Phf6 assembly
C430049B03Rik assembly
Utp14a assembly
Htatsf1 assembly
Tmem29 assembly
Bhlhb9 assembly
Pdzd11 assembly
Amer1 assembly
Zcchc12 assembly
Alg13 assembly
Slc25a53 assembly
2810403D21Rik assembly
Zfp711 assembly
Rbmx2 assembly
Rnf113a1 assembly
Kantr assembly
Magt1 assembly
Map7d2 assembly
Rbm3os assembly
2900005I04Rik assembly
Bcor assembly
2900011F02Rik assembly
2900054C01Rik assembly
Kantr assembly
Panct1 assembly
Arxes2 assembly
Gria3 assembly
2900075N08Rik assembly
3010001F23Rik assembly
Tmem47 assembly
Armcx1 assembly
Gprasp1 assembly
Mid1ip1 assembly
3110056K14Rik assembly
3110067C02Rik assembly
Gpr173 assembly
Armcx2 assembly
Magea9 assembly
Tceal8 assembly
Pabir2 assembly
2810403D21Rik assembly
4732460I02Rik assembly
4732468M13Rik assembly
Trmt2b assembly
Ogt assembly
Atrx assembly
Fundc2 assembly
Alg13 assembly
Maged2 assembly
Tbc1d8b assembly
Fam47c assembly
4921511E18Rik assembly
Samt1b assembly
Dmrtc1a assembly
Tab3 assembly
Cylc1 assembly
Ppp1r2-ps9 assembly
Satl1 assembly
Vsig1 assembly
Cldn34c4 assembly
Ssxb1 assembly
4930422N03Rik assembly
Pabir3 assembly
4930447F04Rik assembly
Nxf2 assembly
Cldn34d assembly
4930480E11Rik assembly
4930500G05Rik assembly
4930503H13Rik assembly
4930513O06Rik assembly
4930515L19Rik assembly
4930519F16Rik assembly
Flicr assembly
Samt2b assembly
Pabir3 assembly
Pramex1 assembly
Ints6l assembly
Samt4 assembly
4930544C05Rik assembly
Magea13 assembly
4930554N03Rik assembly
4930555B12Rik assembly
H2al3 assembly
4930558G05Rik assembly
Tex11 assembly
4930570D08Rik assembly
Dipk2b assembly
Arhgef6 assembly
4931400O07Rik assembly
Cypt1 assembly
Phf6 assembly
Lonrf3 assembly
Scml2 assembly
Fam90a1b assembly
Capza1b assembly
4933401B06Rik assembly
Magec2 assembly
Tex13b assembly
4933403O08Rik assembly
Zxda assembly
Efhc2 assembly
4933407K13Rik assembly
4933416E14Rik assembly
Arl13a assembly
Map7d3 assembly
4933428M09Rik assembly
4933434C23Rik assembly
4933436I01Rik assembly
Tafazzin assembly
Zrsr2 assembly
Dock11 assembly
5033418A18Rik assembly
Map7d2 assembly
5330434G04Rik assembly
Gprasp2 assembly
5430402E10Rik assembly
Tasl assembly
5430428K19Rik assembly
5530601H04Rik assembly
Morc4 assembly
Atp6ap2 assembly
5730405O15Rik assembly
5730407O05Rik assembly
5730412P04Rik assembly
5730416F02Rik assembly
5730419A17Rik assembly
Lonrf3 assembly
Lpar4 assembly
Smarca1 assembly
Upf3b assembly
P2ry10 assembly
5830417A05Rik assembly
Firre assembly
Las1l assembly
Gab3 assembly
Apln assembly
Zdhhc15 assembly
6030498E09Rik assembly
Usp11 assembly
Smim10l2a assembly
Thoc2 assembly
Klhl15 assembly
Phka2 assembly
Ints6l assembly
Il1rapl1 assembly
Tmem29 assembly
Tbc1d25 assembly
Rab39b assembly
Zfp182 assembly
Atp2b3 assembly
Slc9a6 assembly
Arxes1 assembly
6530403M18Rik assembly
Gpr165 assembly
Bcorl1 assembly
Apool assembly
Tspan6 assembly
Car5b assembly
Bcor assembly
Chmp1b2 assembly
8430425A16Rik assembly
8430439B09Rik assembly
Xpnpep2 assembly
Zmym3 assembly
Tmem35a assembly
Tbc1d8b assembly
Tafazzin assembly
Gdpd2 assembly
9230113A04Rik assembly
Fate1 assembly
9330119M13Rik assembly
9330168M11Rik assembly
Rab9b assembly
9430014K20Rik assembly
Dach2 assembly
Nkrf assembly
C430049B03Rik assembly
Eda2r assembly
9430082L08Rik assembly
Apool assembly
Pwwp3b assembly
Ocrl assembly
Zfp449 assembly
9530051G07Rik assembly
9530062E16Rik assembly
Kctd12b assembly
Gpc4 assembly
Zdhhc9 assembly
Mbtps2 assembly
Arhgef9 assembly
Spin4 assembly
Mmgt1 assembly
Phka1 assembly
Phf8 assembly
Dcaf12l2 assembly
Arhgap4 assembly
Zc3h12b assembly
4933407K13Rik assembly
Dcaf12l1 assembly
A230058F20Rik assembly
A230072C01Rik assembly
Nlgn3 assembly
Pcdh11x assembly
Syp assembly
A230106O10Rik assembly
Atp11c assembly
Yipf6 assembly
Arhgap4 assembly
Mbnl3 assembly
Slc9a7 assembly
A630012P03Rik assembly
P2ry10b assembly
Sertm2 assembly
Klf8 assembly
Akap17b assembly
A130057A22Rik assembly
Acot9 assembly
Ace2 assembly
Radx assembly
Kif4 assembly
Ctps2 assembly
6330509M05Rik assembly
Nxt2 assembly
Tfe3 assembly
Ap1s2 assembly
Ammecr1 assembly
Ap1s2 assembly
Apln assembly
Naa10 assembly
Arhgef6 assembly
Asb11 assembly
Asb9 assembly
Bmp15 assembly
Taf1 assembly
Acsl4 assembly
Lonrf3 assembly
Med14 assembly
Firre assembly
Gemin8 assembly
Mcf2 assembly
B230118I11Rik assembly
B230119M05Rik assembly
Ftx assembly
Akap17b assembly
B230340J04Rik assembly
Kctd12b assembly
Adgrg2 assembly
B930008F14Rik assembly
Zmat1 assembly
Bcorl1 assembly
B930042K01Rik assembly
Gemin8 assembly
Bcap31 assembly
Bmx assembly
Brs3 assembly
C030001C17Rik assembly
C030023E24Rik assembly
C030034E14Rik assembly
Map7d2 assembly
Heph assembly
Klhl4 assembly
Ophn1 assembly
Mpp1 assembly
C230067J06Rik assembly
Steep1 assembly
Platr21 assembly
C430004N12Rik assembly
Huwe1 assembly
Apex2 assembly
C430049B03Rik assembly
Brcc3 assembly
Shroom2 assembly
Cstf2 assembly
Nexmif assembly
Septin6 assembly
Chm assembly
Chst7 assembly
Cldn2 assembly
Zcchc13 assembly
Med14 assembly
Ctps2 assembly
Cul4b assembly
Cysltr1 assembly
D030036P13Rik assembly
Brwd3 assembly
Fam50a assembly
Klhl13 assembly
Pdzd4 assembly
Tbx22 assembly
D230050J18Rik assembly
Ercc6l assembly
Rbm41 assembly
Mecp2 assembly
Car5b assembly
D830012I24Rik assembly
Fam120c assembly
Clcn5 assembly
Gk assembly
Bcor assembly
Slitrk4 assembly
Dcx assembly
Drp2 assembly
E030036C24Rik assembly
Zbtb33 assembly
E130102C15Rik assembly
Apool assembly
E130114A11Rik assembly
Amot assembly
E430013K19Rik assembly
Diaph2 assembly
Mbnl3 assembly
Rbm10 assembly
Etd assembly
Flna assembly
Tsc22d3 assembly
Gpm6b assembly
Gpr34 assembly
Gpr82 assembly
Rlim assembly
Hsd17b10 assembly
Hccs assembly
Hs6st2 assembly
Igbp1 assembly
Il1rapl2 assembly
Itgb1bp2 assembly
Itm2a assembly
Kcne1l assembly
Magee1 assembly
Cd99l2 assembly
Morf4l2 assembly
Msn assembly
Ndufa1 assembly
Nudt11 assembly
Cltrn assembly
Obp1a assembly
Tenm1 assembly
P2ry4 assembly
Pak3 assembly
Pcsk1n assembly
Pfkfb1 assembly
Plxnb3 assembly
Porcn assembly
Prkx assembly
Psmd10 assembly
Rhox6 assembly
Rhox9 assembly
Rab9 assembly
Rbbp7 assembly
Rbmx assembly
Rp2 assembly
Rpgr assembly
Trappc2 assembly
Septin6 assembly
Sh2d1a assembly
Sh3kbp1 assembly
Slc6a14 assembly
Smc1a assembly
Smpx assembly
Snx12 assembly
Srpx assembly
Stag2 assembly
Srpk3 assembly
Syap1 assembly
Sytl4 assembly
Taf7l assembly
Dynlt3 assembly
Tspan7 assembly
Tnmd assembly
Tro assembly
Huwe1 assembly
Usp26 assembly
Uxt assembly
Tceal9 assembly
Wdr13 assembly
Clcn5 assembly
Usp27x assembly
Ccdc22 assembly
Syp assembly
Akap4 assembly
Wdr45 assembly
Praf2 assembly
Gpkow assembly
Ccdc120 assembly
Prickle3 assembly
Magix assembly
Suv39h1 assembly
Otud5 assembly
Ebp assembly
Ftsj1 assembly
Pim2 assembly
Pqbp1 assembly
Slc35a2 assembly
Timm17b assembly
Kcnd1 assembly
Cybb assembly
Otc assembly
Maoa assembly
Maob assembly
Usp9x assembly
Araf assembly
Elk1 assembly
Syn1 assembly
Agtr2 assembly
Slc25a5 assembly
Lamp2 assembly
Slc25a14 assembly
Plac1 assembly
Hprt assembly
Fmr1 assembly
Mtm1 assembly
Cetn2 assembly
Nsdhl assembly
Zfp185 assembly
F8a assembly
Zfp275 assembly
Abcd1 assembly
Idh3g assembly
Avpr2 assembly
Renbp assembly
Hcfc1 assembly
Irak1 assembly
Gdi1 assembly
Ubl4a assembly
Vbp1 assembly
Tbl1x assembly
Dmd assembly
Eif2s3x assembly
Gk assembly
Pola1 assembly
Maged1 assembly
Zfx assembly
Pja1 assembly
Eda assembly
Abcb7 assembly
Gjb1 assembly
Xist assembly
Tsx assembly
Chic1 assembly
Nap1l2 assembly
Atrx assembly
Atp7a assembly
Rlim assembly
Dach2 assembly
Gla assembly
Nrk assembly
Bex3 assembly
Bex1 assembly
Irs4 assembly
Prps1 assembly
Mid2 assembly
Col4a5 assembly
Alas2 assembly
Trpc5 assembly
Tspyl2 assembly
Kdm5c assembly
Gpr143 assembly
Sat1 assembly
Htr2c assembly
Prdx4 assembly
Grpr assembly
Piga assembly
Egfl6 assembly
Prps2 assembly
Tmsb4x assembly
  • Reference
    The markers listed below for this experiment were mapped to mouse chromosomes based on sequence similarities to the Mouse Genome Sequencing Consortium (MGSC V3) assembly. Chromosomal locations were obtained from the Genome Exploration Research Group of the RIKEN Institute of Physical and Chemical Research in Japan. Where multiple RIKEN clones were associated to the same marker by sequence similarity clustering, mapping data were loaded only if all RIKEN clones from the same cluster mapped to the same mouse chromosome.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Copyright, and Privacy Statement
Send questions and comments to User Support.
last database update
MGI 6.22
The Jackson Laboratory