A630012P03Rik Gene Detail

Summary

• Symbol
  A630012P03Rik
• Name
  RIKEN cDNA A630012P03 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:2442968
  NCBI Gene: 100504594
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  ChrX:51664720-51707924 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 29.02 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  716 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_2442968	lncRNA gene	ChrX:51664720-51707924 (+)
129S1/SvImJ	ENSMUSG00200037806	lncRNA gene	ChrX:35548285-35591467 (+)
A/J	ENSMUSG00195018556	lncRNA gene	ChrX:38318146-38361338 (+)
AKR/J	ENSMUSG00220039051	lncRNA gene	ChrX:35203140-35246336 (+)
BALB/cJ	ENSMUSG00180035840	lncRNA gene	ChrX:36032668-36075864 (+)
C3H/HeJ	ENSMUSG00175042103	lncRNA gene	ChrX:39057198-39100381 (+)
C57BL/6NJ	ENSMUSG00215048862	lncRNA gene	ChrX:36052521-36095735 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0004276	antisense lncRNA gene	ChrX:45099157-45142353 (+)
CAST/EiJ	ENSTCUG00005039094	lncRNA gene	ChrX:38019796-38063134 (+)
CBA/J	ENSMUSG00210040384	lncRNA gene	ChrX:36296429-36339613 (+)
DBA/2J	ENSMUSG00185035303	lncRNA gene	ChrX:47000401-47043600 (+)
FVB/NJ	ENSMUSG00205030488	lncRNA gene	ChrX:34643953-34687164 (+)
JF1/MsJ	ENSUMUG00000028390	lncRNA gene	ChrX:66027944-66071494 (+)
LP/J	ENSMUSG00230029526	lncRNA gene	ChrX:53551738-53594923 (+)
NOD/ShiLtJ	ENSMUSG00190040239	lncRNA gene	ChrX:35411671-35454881 (+)
NZO/HlLtJ	ENSMUSG00225043177	lncRNA gene	ChrX:58726450-58769651 (+)
PWK/PhJ	ENSLUMG00010043506	lncRNA gene	ChrX:35714414-35757872 (+)
SPRET/EiJ	ENSMSPG00010024452	lncRNA gene	ChrX:37410207-37454592 (+)
WSB/EiJ	ENSIUOG00005047356	lncRNA gene	ChrX:36543885-36587123 (+)

Homology

• Gene Tree
  A630012P03Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  1
• Targeted
  1
• Find Mice (IMSR)
  1 strains or lines available

Expression

• Assay Results
  608
• Tissues
  2
• cDNA Data
  10
• Literature Summary
  1

Images

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000055110 (Evidence)
• NCBI Gene
  100504594

Representative Sequences			Length	Strain/Species
genomic	100504594	NCBI Gene Model | MGI Sequence Detail	43205	C57BL/6J
transcript	NR_045367	RefSeq | MGI Sequence Detail	1972	C57BL/6
polypeptide	Q8C9S7	UniProt | EBI | MGI Sequence Detail	216	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 10

  cDNA 10

  
  

  Microarray probesets 2

References

• Summaries
  All 16

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
• Latest
  J:173534 Skarnes WC, et al., A conditional knockout resource for the genome-wide study of mouse gene function. Nature. 2011 Jun 16;474(7351):337-42