MGI-Mouse Genes, Genome Features & Maps

Genes, Genome Features & Maps
MGI provides access to integrated data on mouse genes and genome features, from sequences and genomic maps to gene expression and disease models.

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Gene models from MGI, NCBI and Ensembl, and alleles with immune phenotypes for the gene Icam1

Access Data

Search for genes and genome features by symbol, name, location, gene ontology classification or phenotype.: Genes and Markers Query
Create a display of regions of the mouse genome.: JBrowse Genome Browser
Compare genome features of de novo sequenced mouse strains.: Multiple Genome Viewer (MGV)
Input a list of gene IDs or symbols and retrieve other database IDs and gene attributes (e.g. phenotypes, GO).: Batch Query
Download plain text files of all genes and markers in MGI.: Genes & Markers Reports (plain text)
Read the guidelines for mouse gene nomenclature.: Complete Guide to Nomenclature
Submit a new gene or genome feature and receive official nomenclature and an MGI accession identifier.: Gene/Genome Feature/Locus Nomenclature Form
Access the genome assemblies of multiple mouse strains at the Sanger Institute.: Sanger Mouse Genomes home page; Sanger Mouse Genomes ftp site mirror at JAX

FAQs

How do I...: .. search for genes, QTL, or other features in a specific genomic interval? FAQ; .. search for a gene using an Entrez, Ensembl, or other accession ID? FAQ; .. search for targeted or spontaneous alleles associated with a gene or marker? FAQ; .. retrieve Entrez gene, Ensembl, VEGA, or other IDs for a list of genes? FAQ; .. create a genome map from a genomic interval? FAQ; .. see different gene models along with the MGI-curated representative model? FAQ

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Genes, Genome Features & Maps Includes

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Genes, Genome Features & Maps News October 16, 2018

For Mus musculus Build GRCm39 patch information and statistics, see The Genome Reference Consortium web site. MGI now incorporates strain genome data of de novo sequenced mouse strains from the Wellcome Sanger Institute's Mouse Genomes Project (MGP) and the European Bioinformatics Institute (EBI). Genome feature annotations are provided by the GENCODE consortium, the University of California Santa Cruz (UCSC) Genome Browser Group and the Mouse Genomes Project. Browse strain genome features using the Multiple Genome Viewer (MGV).

MGI-Mouse Genes, Genome Features & Maps: - Genes, Genome Features & Maps: About

Genes, Genome Features

MGI contains information about mouse genes, DNA segments, cytogenetic markers and QTLs. Each record may include the marker symbol, name, other names or symbols and synonyms, nomenclature history, alleles, STSs, chromosomal assignment, centimorgan location, cytogenetic band, EC number (for enzymes), phenotypic classifications, human disease data, Gene Ontology (GO) terms, MGI accession IDs and supporting references. See Interpreting a Genes and Markers Summary and Interpreting Gene Details for more information about the content of the display of a marker record as it appears in the query results.

Maps

MGI contains a variety of maps and mapping data. Users can create graphical displays of genome features on the mouse genome using the JBrowse Genome Browser. A variety of types of Genetic Mapping Data are available from marker detail pages, including data from genetic linkage crosses, cytogenetic localization, recombinant inbred and recombinant congenic strains, and radiation hybrid mapping.

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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