MGI Data and Statistical Reports

Downloads of short gene descriptions, gene expression, disease annotations, genetic and molecular interaction, and variant data for mouse available from the Alliance of Genome Resources.

These files, along with some additional reports, are also available from this Index.

Mouse Genetic Markers

1. List of Mouse Genetic Markers (sorted alphabetically by marker symbol, tab-delimited) MGI Marker Accession ID Chromosome cM Position Genome Coordinate Start Genome Coordinate End Genome Strand Marker Symbol Status Marker Name Marker Type Feature Types (|-delimted) Marker Synonyms (|-delimited)         MRK_List1.rpt (including withdrawn marker symbols)         MRK_List2.rpt (excluding withdrawn marker symbols)

2. MGI Marker Coordinates (tab-delimited) MGI Marker Accession ID Marker Type Feature Type Marker Symbol Marker Name Chromosome Start Coordinate End Coordinate Strand Genome Build Provider Provider Display         MGI_MRK_Coord.rpt (GRCm39)

Sequence Data

1. MGI Gene Model Coordinates (tab-delimited) MGI Marker Accession ID Marker Type Marker Symbol Marker Name Genome Build Entrez Gene ID NCBI Gene Chromosome NCBI Gene Start NCBI Gene End NCBI Gene Strand Ensembl Gene ID Ensembl Gene Chromosome Ensembl Gene Start Ensembl Gene End Ensembl Gene Strand         MGI_Gene_Model_Coord.rpt (GRCm39)

2. MGI Sequence Coordinates (in GFF format)(tab-delimited) Chromosome Source of Feature Marker Type Start Coordinate End Coordinate Empty Column Strand Empty Column ID=MGI ID;Name=marker symbol;Note=marker feature         MGI_GTGUP.gff (GRCm39)

3. MGI Sequence Coordinates (in GFF3 format)(tab-delimited)         3a.MGI.gff3.gz         3b.MGIreg.gff3.gz (regulatory features)

4. MGI Marker associations to Sequence (GenBank, RefSeq,Ensembl) information (tab-delimited) MGI Marker Accession ID Marker Symbol Status Marker Type Marker Name cM Position Chromosome Genome Coordinate Start Genome Coordinate End Strand GenBank Accession IDs (pipe-delimited) RefSeq Transcript ID (if any) Ensembl Transcript ID (if any) UniProt ID (if any) TrEMBL ID (if any) Ensembl protein ID (if any) RefSeq protein ID (if any) Unigene ID (if any)         MRK_Sequence.rpt

5. MGI Marker associations to SWISS-PROT and TrEMBL protein IDs (tab-delimited) MGI Marker Accession ID Marker Symbol Status Marker Name cM Position Chromosome SWISS-PROT/TrEMBL Protein Accession IDs (space-delimited)         MRK_SwissProt_TrEMBL.rpt

6. MGI Marker associations to SWISS-PROT protein IDs (tab-delimited) MGI Marker Accession ID Marker Symbol Status Marker Name cM Position Chromosome SWISS-PROT Protein Accession IDs (space-delimited)         MRK_SwissProt.rpt

7. MGI Marker associations to Gene Trap IDs (tab-delimited) MGI Marker Accession ID Marker Symbol Status Marker Name cM Position Chromosome Mutant Cell Line IDs (space-delimited)         MRK_GeneTrap.rpt

8. MGI Marker associations to Entrez Gene (tab-delimited) MGI Marker Accession ID Marker Symbol Status Marker Name cM Position Chromosome Type Gene DNA Segment Other Genome Feature Complex/Cluster/Region microRNA Secondary Accession IDs (|-delimited) Entrez Gene ID Synonyms (|-delimited) Feature Types (|-delimited) Genome Coordinate Start Genome Coordinate End Strand BioTypes (|-delimited)         MGI_EntrezGene.rpt

9. MGI Marker associations to Ensembl sequence information (tab-delimited) MGI Marker Accession ID Marker Symbol Marker Name cM Position Chromosome Ensembl Accession ID Ensembl Transcript ID (space-delimited, if any) Ensembl Protein ID (space-delimited, if any) Feature Types (|-delimited) Genome Coordinate Start Genome Coordinate End Strand BioTypes (|-delimited)         MRK_ENSEMBL.rpt

10. MGI Marker associations to Ensembl or NCBI gene models where a gene vs. pseudogene discrepancy exists(tab-delimited) Marker Symbol Provider Source Gene ID Biotype MGI Representative Gene Model         MGI_BioTypeConflict.rpt

11. Primer Sequences Marker Symbol Marker Name Primer Marker Name MGI Marker Accession ID MGI Primer Pair ID Primer 1 Sequence Primer 2 Sequence Amplimer Size Chromosome Map Position         PRB_PrimerSeq.rpt

12. InterPro Domains (tab-delimited) InterPro ID Domain Marker Name MGI Marker Accession ID Marker Symbol         MGI_InterProDomains.rpt

Vertebrate Homology

1. Homology Classes - Includes: mouse, human, rat, zebrafish (tab-delimited) DB Class Key Common Organism Name NCBI Taxon ID Symbol EntrezGene ID Mouse MGI ID HGNC ID OMIM gene ID Genetic Location Genome Coordinates: Build Name Synonyms (pipe-delimited)         HOM_AllOrganism.rpt (sorted by DB Class Key)

2. Human and Mouse Homology Classes with Sequence information (tab-delimited) DB Class Key Common Organism Name NCBI Taxon ID Symbol EntrezGene ID Mouse MGI ID HGNC ID OMIM gene ID Genetic Location Genome Coordinates: Build Nucleotide RefSeq ID (comma-delimited) Protein RefSeq ID (comma-delimited) SWISS-PROT IDs (comma-delimited)         HOM_MouseHumanSequence.rpt (sorted by DB Class Key) 3. Mouse Genes with Alliance Homology and HGNC and CCDS IDs MGI Marker Accession ID Mouse Marker Symbol Mouse Marker Name NCBI Gene ID NCBI Gene Chromosome NCBI Gene start NCBI Gene end NCBI Gene strand Ensembl Gene ID Ensembl Gene chromosome Ensembl Gene start Ensembl Gene end Ensembl Gene strand CCDS IDs (comma delimited) HGNC ID         HGNC_AllianceHomology.rpt 4. Mouse/Human Orthology with Phenotype Annotations (tab-delimited) Human Marker Symbol Human Entrez Gene ID Mouse Marker Symbol MGI Marker Accession ID High-level Mammalian Phenotype ID (comma-delimited)         HMD_HumanPhenotype.rpt