Gene Expression |
1. MGI Genetic Markers with GXD Literature Content Records (tab-delimited) |
MGI Marker Accession ID | Mouse Marker Symbol | MGI Reference Accession ID (J:) (comma-delimited) |
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MRK_GXD.rpt
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2. MGI Genetic Markers with GXD Assay Records (tab-delimited) |
MGI Marker Accession ID | Mouse Marker Symbol | MGI Assay Accession ID (comma-delimited) |
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MRK_GXDAssay.rpt
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3. MGI Microarray Annotation Files (tab-delimited) |
Probeset ID | Sequence ID | MGI ID | Gene Symbol | Gene Name | Chromosome | Start Coordinate | End Coordinate | Strand |
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Affy_1.0_ST_mgi.rpt (Affymetrix Mouse Gene 1.0 ST Array) |
Affy_430_2.0_mgi.rpt (Affymetrix GeneChip Mouse Genome 430 2.0 Array) |
Affy_U74_mgi.rpt (Affymetrix GeneChip Mouse Genome U74A-B-C_2) |
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6. Mammalian Phenotype (MP)-Mouse Developmental Anatomy (EMAPA) Mappings |
MP ID | MP Term | EMAPA ID | EMAPA Term |
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MP_EMAPA.rpt
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Alleles and Phenotypes |
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2. Mouse/Human Orthology with Phenotype Annotations (tab-delimited) |
Human Marker Symbol | Human Entrez Gene ID | Mouse Marker Symbol | MGI Marker Accession ID | High-level Mammalian Phenotype ID (space-delimited) |
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HMD_HumanPhenotype.rpt |
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3. List of All Mouse Phenotypic Alleles (tab-delimited) |
MGI Allele Accession ID |
Allele Symbol |
Allele Name |
Allele Type |
Allele Attribute |
PubMed ID for original reference |
MGI Marker Accession ID |
Marker Symbol |
Marker RefSeq ID |
Marker Ensembl ID |
High-level Mammalian Phenotype ID (comma-delimited) |
Synonyms (|-delimited) |
Marker Name |
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MGI_PhenotypicAllele.rpt |
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4. List of All Mouse QTL Alleles (tab-delimited) |
MGI Allele Accession ID |
Allele Symbol |
Allele Name |
Allele Type |
PubMed ID for original reference |
MGI Marker Accession ID |
Marker Symbol |
Marker RefSeq ID |
Marker Ensembl ID |
Marker Chromosome |
Marker Start Coordinate |
Marker End Coordinate |
Genome Build |
High-level Mammalian Phenotype ID (comma-delimited) |
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MGI_QTLAllele.rpt |
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5. All Genotypes and Mammalian Phenotype Annotations (tab-delimited) |
Allelic Composition | Allele Symbol(s) | Genetic Background | Mammalian Phenotype ID | PubMed ID | MGI Marker Accession ID (comma-delimited) |
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MGI_PhenoGenoMP.rpt |
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6. List of All KOMP Alleles (tab-delimited) |
Mutant Cell Line ID | Logical DB Name | MGI Allele Accession ID | Allele Symbol | Allele Name | MGI Marker Accession ID | Marker Symbol |
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KOMP_Allele.rpt |
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7. List of All EUCOMM Alleles (tab-delimited) |
Mutant Cell Line ID | Logical DB Name | MGI Allele Accession ID | Allele Symbol | Allele Name | MGI Marker Accession ID | Marker Symbol |
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EUCOMM_Allele.rpt |
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8. List of All NorCOMM Alleles (tab-delimited) |
Mutant Cell Line ID | Logical DB Name | MGI Allele Accession ID | Allele Symbol | Allele Name | MGI Marker Accession ID | Marker Symbol |
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NorCOMM_Allele.rpt |
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9. Genotypes and Mammalian Phenotype Annotations for Marker Type Genes excluding conditional mutations (tab-delimited) |
Allelic Composition | Allele Symbol(s) | Allele ID(s) | Genetic Background | Mammalian Phenotype ID | PubMed ID (pipe-delimited) | MGI Marker Accession ID (pipe-delimited) | MGI Genotype Accession ID (pipe-delimited) |
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MGI_GenePheno.rpt |
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10. Genotypes with both Phenotype and Disease Annotations for Marker Type Genes, excluding conditional mutations (tab-delimited) |
Allelic Composition | Allele Symbol(s) | Allele ID(s) | Genetic Background | Mammalian Phenotype ID | PubMed ID (pipe-delimited) | MGI Marker Accession ID (pipe-delimited) | DO ID (pipe-delimited) |
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MGI_Geno_DiseaseDO.rpt |
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11. Genotypes with both Phenotype and Negated Disease Annotations for Marker Type Genes, excluding conditional mutations (tab-delimited) |
Allelic Composition | Allele Symbol(s) | Allele ID(s) | Genetic Background | Mammalian Phenotype ID | PubMed ID (pipe-delimited) | MGI Marker Accession ID (pipe-delimited) | DO ID (pipe-delimited) |
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MGI_Geno_NotDiseaseDO.rpt |
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12. Associations of Mouse Genes with DO Diseases |
DO Disease ID | DO Disease Name | OMIM ID (pipe delimited) | Common Organism Name | NCBI Taxon ID | Symbol | EntrezGene ID | Mouse MGI ID |
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MGI_DO.rpt |
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13. IMSR/KOMP Counts |
Marker Symbol | MGI Marker Accession ID | Total number of IMSR Strains | Total number of Alleles |
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MGI_IMSRKomp.rpt |
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14.Genotypes with Sex-specific Phenotypes |
Genotype ID | Sex | MP ID | MP Term | Allelic Composition | Background Strain | Sex-specific Normal Y/N | Citation (MGI ID if no PubMed ID) |
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MGI_Pheno_Sex.rpt |
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