Platr21 Gene Detail

Summary

• Symbol
  Platr21
• Name
  pluripotency associated transcript 21
• Synonyms
  C330013F16Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1925776
  NCBI Gene: 78526
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:138140975-138258487 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 61.30 cM
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  2643 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925776	lncRNA gene	ChrX:138140975-138259991 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015795	unclassified non-coding RNA gene	ChrX:136716835-136851182 (-)
A/J	MGP_AJ_G0015770	unclassified non-coding RNA gene	ChrX:136105377-136230523 (-)
AKR/J	MGP_AKRJ_G0015735	unclassified non-coding RNA gene	ChrX:140497881-140627899 (-)
BALB/cJ	MGP_BALBcJ_G0015733	unclassified non-coding RNA gene	ChrX:134460202-134591289 (-)
C3H/HeJ	MGP_C3HHeJ_G0015552	unclassified non-coding RNA gene	ChrX:136742893-136874840 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016188	unclassified non-coding RNA gene	ChrX:140766137-140890088 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013909	unclassified non-coding RNA gene	ChrX:127895862-128013498 (-)
CAST/EiJ	MGP_CASTEiJ_G0015111	unclassified non-coding RNA gene	ChrX:117558879-117685407 (-)
CBA/J	MGP_CBAJ_G0015532	unclassified non-coding RNA gene	ChrX:145035739-145170174 (-)
DBA/2J	MGP_DBA2J_G0015630	unclassified non-coding RNA gene	ChrX:135308564-135431677 (-)
FVB/NJ	MGP_FVBNJ_G0015635	unclassified non-coding RNA gene	ChrX:134534986-134658646 (-)
LP/J	MGP_LPJ_G0015713	unclassified non-coding RNA gene	ChrX:137688948-137836325 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015660	unclassified non-coding RNA gene	ChrX:152562137-152701403 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016233	unclassified non-coding RNA gene	ChrX:136053061-136178588 (-)
PWK/PhJ	MGP_PWKPhJ_G0014890	unclassified non-coding RNA gene	ChrX:114500601-114626826 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014676	unclassified non-coding RNA gene	ChrX:118093547-118218682 (-)
WSB/EiJ	MGP_WSBEiJ_G0015211	unclassified non-coding RNA gene	ChrX:134356173-134483815 (-)

Homology

• Gene Tree
  Platr21
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  4 phenotype references
  

• All Mutations and Alleles
  7
• Gene trapped
  7
• Find Mice (IMSR)
  11 strains or lines available

Expression

• Assay Results
  706
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  38
• RefSeq
  2

• Ensembl
  ENSMUSG00000086807 (Evidence)
• NCBI Gene
  78526

Representative Sequences			Length	Strain/Species
genomic	78526	NCBI Gene Model | MGI Sequence Detail	117513	C57BL/6J
transcript	NR_045455	RefSeq | MGI Sequence Detail	3511	C57BL/6

Molecular
Reagents

• All nucleic 2

  cDNA 2

References

• Summaries
  All 14

  Phenotypes 4
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:241492 Bergmann JH, et al., Regulation of the ESC transcriptome by nuclear long noncoding RNAs. Genome Res. 2015 Sep;25(9):1336-46

TSS for Platr21:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164217	ChrX:138258452-138258489 (-)	16 bp
Tssr164216	ChrX:138257483-138257493 (-)	999 bp