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Rbm41 Gene Detail
Summary
  • Symbol
    Rbm41
  • Name
    RNA binding motif protein 41
  • Synonyms
    D330023I21Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:2444923
    NCBI Gene: 237073
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:138790260-138899344 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 61.35 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    298 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2444923
 protein coding gene ChrX:138790260-138899344 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036130
 protein coding gene ChrX:137411139-137523760 (-)
A/J MGP_AJ_G0036108
 protein coding gene ChrX:136788700-136894107 (-)
AKR/J MGP_AKRJ_G0036033
 protein coding gene ChrX:141183782-141296610 (-)
BALB/cJ MGP_BALBcJ_G0036098
 protein coding gene ChrX:135130943-135234967 (-)
C3H/HeJ MGP_C3HHeJ_G0035807
 protein coding gene ChrX:137438295-137547499 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036623
 protein coding gene ChrX:141444911-141562185 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033447
 protein coding gene ChrX:128534806-128641182 (-)
CAST/EiJ MGP_CASTEiJ_G0035098
 protein coding gene ChrX:118239526-118352129 (-)
CBA/J MGP_CBAJ_G0035784
 protein coding gene ChrX:145776480-145894560 (-)
DBA/2J MGP_DBA2J_G0035941
 protein coding gene ChrX:135959426-136067014 (-)
FVB/NJ MGP_FVBNJ_G0035875
 protein coding gene ChrX:135193187-135298605 (-)
LP/J MGP_LPJ_G0036032
 protein coding gene ChrX:138379563-138484904 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035912
 protein coding gene ChrX:153304386-153428115 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036659
 protein coding gene ChrX:136719972-136833854 (-)
PWK/PhJ MGP_PWKPhJ_G0034791
 protein coding gene ChrX:115164382-115267280 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034617
 protein coding gene ChrX:118780038-118886190 (-)
WSB/EiJ MGP_WSBEiJ_G0035233
 protein coding gene ChrX:135043850-135163956 (-)



Homology
more
  • Human Ortholog
    RBM41, RNA binding motif protein 41
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    RBM41, RNA binding motif protein 41
  • Links
    NCBI Gene ID: 55285
    neXtProt AC: NX_Q96IZ5
    UniProt: Q96IZ5

  • Chr Location
    Xq22.3; chrX:107052102-107118823 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    20 images
    10 phenotype references
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    4
  • GO References
    1
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    728
  • Tissues
    22
  • cDNA Data
    40
  • Literature Summary
    1
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic 237073 NCBI Gene Model | MGI Sequence Detail 109085 C57BL/6J ±  kb
transcript NM_001172147 RefSeq | MGI Sequence Detail 5621 C57BL/6  
polypeptide Q8JZV4 UniProt | EBI | MGI Sequence Detail 413 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 41
    cDNA 40
    Primer pair 1

    Microarray probesets 2
Other
Accession IDs
less
MGI:2148038
References
more
  • Summaries
    All 30
    Developmental Gene Expression 1
    Gene Ontology 1
    Phenotypes 10
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory