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Pdzd4 Gene Detail
Summary
  • Symbol
    Pdzd4
  • Name
    PDZ domain containing 4
  • Synonyms
    D130075J17Rik, Kiaa1444-hp, LU1, PDZD4, Pdzk4, PDZRN4L, Pdzrnk4l, Xlu
  • Feature Type
    protein coding gene
  • IDs
    MGI:2443483
    NCBI Gene: 245469
  • Alliance
    gene page
  • Transcription Start Sites
    8 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:72836965-72868575 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 37.41 cM
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    100 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2443483
 protein coding gene ChrX:72836963-72868649 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035822
 protein coding gene ChrX:69568648-69604054 (-)
A/J MGP_AJ_G0035803
 protein coding gene ChrX:69766158-69798933 (-)
AKR/J MGP_AKRJ_G0035728
 protein coding gene ChrX:71586715-71623518 (-)
BALB/cJ MGP_BALBcJ_G0035788
 protein coding gene ChrX:68796970-68829062 (-)
C3H/HeJ MGP_C3HHeJ_G0035493
 protein coding gene ChrX:70042579-70077245 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036318
 protein coding gene ChrX:71699197-71731734 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033162
 protein coding gene ChrX:68796214-68826756 (-)
CAST/EiJ MGP_CASTEiJ_G0034784
 protein coding gene ChrX:55388216-55425076 (-)
CBA/J MGP_CBAJ_G0035468
 protein coding gene ChrX:73679420-73723013 (-)
DBA/2J MGP_DBA2J_G0035625
 protein coding gene ChrX:69223762-69257605 (-)
FVB/NJ MGP_FVBNJ_G0035569
 protein coding gene ChrX:68555653-68588425 (-)
LP/J MGP_LPJ_G0035710
 protein coding gene ChrX:70351223-70384579 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035607
 protein coding gene ChrX:76258986-76292057 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036340
 protein coding gene ChrX:69390001-69424428 (-)
PWK/PhJ MGP_PWKPhJ_G0034483
 protein coding gene ChrX:53404148-53436696 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034317
 protein coding gene ChrX:56291485-56323273 (-)
WSB/EiJ MGP_WSBEiJ_G0034925
 protein coding gene ChrX:68663872-68697337 (-)



Homology
more
  • Human Ortholog
    PDZD4, PDZ domain containing 4
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    PDZD4, PDZ domain containing 4
  • Synonyms
    LNX5, LU1, PDZK4, PDZRN4L
  • Links
    NCBI Gene ID: 57595
    neXtProt AC: NX_Q76G19
    UniProt: Q76G19

  • Chr Location
    Xq28; chrX:153802166-153830567 (-)  GRCh38.p7
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype from 1 allele in 1 genetic background
    1 images
    9 phenotype references
Male chimeras hemizygous for a gene trapped allele appear normal at E9.5.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    788
  • Tissues
    10
  • cDNA Data
    28
  • Literature Summary
    1
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000002006 Ensembl Gene Model | MGI Sequence Detail 31611 C57BL/6J ±  kb
transcript ENSMUST00000002080 Ensembl | MGI Sequence Detail 3970 Not Applicable  
polypeptide ENSMUSP00000002080 Ensembl | MGI Sequence Detail 772 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 28
    cDNA 28

    Microarray probesets 3
Other
Accession IDs
less
MGI:2159602
References
more
  • Summaries
    All 33
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 9
  • Earliest
    J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
05/30/2023
MGI 6.22 		The Jackson Laboratory