About   Help   FAQ
5530601H04Rik Gene Detail
Summary
  • Symbol
    5530601H04Rik
  • Name
    RIKEN cDNA 5530601H04 gene
  • Feature Type
    lncRNA gene
  • IDs
    MGI:1918695
    NCBI Gene: 71445
  • Alliance
    gene page
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:104084460-104113730 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 46.82 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    69 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1918695
 lncRNA gene ChrX:104080803-104123215 (-)
129S1/SvImJ MGP_129S1SvImJ_G0015788
 unclassified non-coding RNA gene ChrX:101789750-101834541 (-)
A/J MGP_AJ_G0015763
 unclassified non-coding RNA gene ChrX:101604861-101646841 (-)
AKR/J MGP_AKRJ_G0015726
 unclassified non-coding RNA gene ChrX:104814389-104856539 (-)
BALB/cJ MGP_BALBcJ_G0015724
 unclassified non-coding RNA gene ChrX:100437615-100480005 (-)
C3H/HeJ MGP_C3HHeJ_G0015545
 unclassified non-coding RNA gene ChrX:102240675-102284857 (-)
C57BL/6NJ MGP_C57BL6NJ_G0016179
 unclassified non-coding RNA gene ChrX:104716514-104760720 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0013902
 unclassified non-coding RNA gene ChrX:99159382-99199799 (-)
CAST/EiJ MGP_CASTEiJ_G0015101
 unclassified non-coding RNA gene ChrX:86434945-86478179 (-)
CBA/J MGP_CBAJ_G0015524
 unclassified non-coding RNA gene ChrX:108015845-108059749 (-)
DBA/2J MGP_DBA2J_G0015623
 unclassified non-coding RNA gene ChrX:100900599-100942378 (-)
FVB/NJ MGP_FVBNJ_G0015628
 unclassified non-coding RNA gene ChrX:100189738-100231874 (-)
LP/J MGP_LPJ_G0015705
 unclassified non-coding RNA gene ChrX:102738905-102787168 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0015651
 unclassified non-coding RNA gene ChrX:112679981-112727254 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0016224
 unclassified non-coding RNA gene ChrX:101449410-101491342 (-)
PWK/PhJ MGP_PWKPhJ_G0014883
 unclassified non-coding RNA gene ChrX:83970026-84012701 (-)
SPRET/EiJ MGP_SPRETEiJ_G0014669
 unclassified non-coding RNA gene ChrX:87144679-87188798 (-)
WSB/EiJ MGP_WSBEiJ_G0015204
 unclassified non-coding RNA gene ChrX:100149624-100192272 (-)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    3 phenotype references
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    35
Sequences &
Gene Models
less
  • All Sequences
    90
  • RefSeq
    1
Representative SequencesLengthStrain/SpeciesFlank
genomic 71445 NCBI Gene Model | MGI Sequence Detail 29271 C57BL/6J ±  kb
transcript NR_015467 RefSeq | MGI Sequence Detail 3732 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 35
    cDNA 35

    Microarray probesets 5
Other
Accession IDs
less
MGI:2147915
References
more
  • Summaries
    All 18
    Phenotypes 3
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
04/16/2024
MGI 6.23 		The Jackson Laboratory