4930513O06Rik Gene Detail

Summary

• Symbol
  4930513O06Rik
• Name
  RIKEN cDNA 4930513O06 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922375
  NCBI Gene: 75125
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:137986994-137994154 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 61.23 cM, cytoband F1
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  227 from dbSNP Build 142
• Strain Annotations
  14

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922375	lncRNA gene	ChrX:137960724-137994204 (+)
129S1/SvImJ	ENSMUSG00200045012	protein coding gene	ChrX:116990656-116997818 (+)
A/J	ENSMUSG00195046802	protein coding gene	ChrX:120849626-120856786 (+)
AKR/J	ENSMUSG00220036296	protein coding gene	ChrX:114297687-114304849 (+)
BALB/cJ	ENSMUSG00180033413	protein coding gene	ChrX:117282360-117289522 (+)
C3H/HeJ	ENSMUSG00175029235	protein coding gene	ChrX:121150065-121157223 (+)
C57BL/6NJ	ENSMUSG00215043092	protein coding gene	ChrX:117695022-117702184 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033437	protein coding gene	ChrX:127751760-127758927 (+)
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210034718	protein coding gene	ChrX:118077003-118084161 (+)
DBA/2J	ENSMUSG00185028399	protein coding gene	ChrX:131968598-131975756 (+)
FVB/NJ	ENSMUSG00205025553	protein coding gene	ChrX:116478750-116485916 (+)
JF1/MsJ	no annotation
LP/J	ENSMUSG00230038705	protein coding gene	ChrX:138591697-138598859 (+)
NOD/ShiLtJ	ENSMUSG00190033645	protein coding gene	ChrX:117483494-117490656 (+)
NZO/HlLtJ	ENSMUSG00225041763	protein coding gene	ChrX:143287436-143294607 (+)
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	no annotation

Homology

• Gene Tree
  4930513O06Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  23
• RefSeq
  2
• UniProt
  1
• CCDS
  CCDS57775.1

• Ensembl
  ENSMUSG00000031270 (Evidence)
• NCBI Gene
  75125

Representative Sequences			Length	Strain/Species
genomic	75125	NCBI Gene Model | MGI Sequence Detail	7161	C57BL/6J
transcript	NR_178216	RefSeq | MGI Sequence Detail	802	C57BL/6
polypeptide	Q9D549	UniProt | EBI | MGI Sequence Detail	161	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 15
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930513O06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162139	ChrX:137986975-137986999 (+)	-7 bp