4930500G05Rik Gene Detail

Summary

• Symbol
  4930500G05Rik
• Name
  RIKEN cDNA 4930500G05 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922287
  NCBI Gene: 75037
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:12844112-12862145 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, Syntenic
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  458 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922287	lncRNA gene	ChrX:12754211-12862153 (+)
129S1/SvImJ	ENSMUSG00200034535	lncRNA gene	ChrX:7498269-7605976 (+)
A/J	ENSMUSG00195042047	lncRNA gene	ChrX:7470581-7578262 (+)
AKR/J	ENSMUSG00220035430	lncRNA gene	ChrX:7007320-7115003 (+)
BALB/cJ	ENSMUSG00180030474	lncRNA gene	ChrX:7470016-7577702 (+)
C3H/HeJ	ENSMUSG00175035546	lncRNA gene	ChrX:7495177-7602866 (+)
C57BL/6NJ	ENSMUSG00215041121	lncRNA gene	ChrX:8133185-8240877 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005035309	lncRNA gene	ChrX:7466109-7574149 (+)
CBA/J	ENSMUSG00210039263	lncRNA gene	ChrX:7544459-7652153 (+)
DBA/2J	ENSMUSG00185036464	lncRNA gene	ChrX:14133686-14241399 (+)
FVB/NJ	ENSMUSG00205036854	lncRNA gene	ChrX:7206286-7314024 (+)
JF1/MsJ	ENSUMUG00000043161	lncRNA gene	ChrX:27985777-28099485 (+)
LP/J	ENSMUSG00230032376	lncRNA gene	ChrX:18716798-18824517 (+)
NOD/ShiLtJ	ENSMUSG00190043917	lncRNA gene	ChrX:7493641-7601336 (+)
NZO/HlLtJ	ENSMUSG00225033866	lncRNA gene	ChrX:23924161-24031843 (+)
PWK/PhJ	ENSLUMG00010036437	lncRNA gene	ChrX:7373700-7487761 (+)
SPRET/EiJ	ENSMSPG00010024952	lncRNA gene	ChrX:8342090-8457001 (+)
WSB/EiJ	ENSIUOG00005016983	lncRNA gene	ChrX:4178593-4286239 (+)

Homology

• Gene Tree
  4930500G05Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype reference
  

• All Mutations and Alleles
  6
• Gene trapped
  6
• Find Mice (IMSR)
  0 strains or lines available

Expression

• cDNA Data
  1

• Other Mouse Links
  GEO

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  1

• Ensembl
  ENSMUSG00000120303 (Evidence)
• NCBI Gene
  75037

Representative Sequences			Length	Strain/Species
genomic	75037	NCBI Gene Model | MGI Sequence Detail	18034	C57BL/6J
transcript	NR_153101	RefSeq | MGI Sequence Detail	1240	ZRU/MplStud

Molecular
Reagents

• All nucleic 1

  cDNA 1

  
  

  Microarray probesets 1

References

• Summaries
  All 8

  Phenotypes 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930500G05Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160574	ChrX:12844095-12844132 (+)	2 bp