4930570D08Rik Gene Detail

Summary

• Symbol
  4930570D08Rik
• Name
  RIKEN cDNA 4930570D08 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1925475
  NCBI Gene: 78225
• Alliance
  gene page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:132799282-132802003 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 55.47 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  124 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1925475	lncRNA gene	ChrX:132799282-132802003 (-)
129S1/SvImJ	MGP_129S1SvImJ_G0015790	unclassified non-coding RNA gene	ChrX:131043890-131046392 (-)
A/J	MGP_AJ_G0015765	unclassified non-coding RNA gene	ChrX:130471582-130474073 (-)
AKR/J	MGP_AKRJ_G0015728	unclassified non-coding RNA gene	ChrX:134638779-134641281 (-)
BALB/cJ	MGP_BALBcJ_G0015726	unclassified non-coding RNA gene	ChrX:128920487-128922989 (-)
C3H/HeJ	MGP_C3HHeJ_G0015547	unclassified non-coding RNA gene	ChrX:131126490-131128992 (-)
C57BL/6NJ	MGP_C57BL6NJ_G0016181	unclassified non-coding RNA gene	ChrX:134909917-134912431 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013904	unclassified non-coding RNA gene	ChrX:122678938-122681416 (-)
CAST/EiJ	MGP_CASTEiJ_G0015103	unclassified non-coding RNA gene	ChrX:112005284-112007790 (-)
CBA/J	MGP_CBAJ_G0015526	unclassified non-coding RNA gene	ChrX:138943803-138946305 (-)
DBA/2J	MGP_DBA2J_G0015625	unclassified non-coding RNA gene	ChrX:129812652-129815154 (-)
FVB/NJ	MGP_FVBNJ_G0015630	unclassified non-coding RNA gene	ChrX:129124006-129126516 (-)
LP/J	MGP_LPJ_G0015707	unclassified non-coding RNA gene	ChrX:131921987-131924489 (-)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015653	unclassified non-coding RNA gene	ChrX:146344212-146346722 (-)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016226	unclassified non-coding RNA gene	ChrX:130471814-130474324 (-)
PWK/PhJ	MGP_PWKPhJ_G0014885	unclassified non-coding RNA gene	ChrX:108958607-108961200 (-)
SPRET/EiJ	MGP_SPRETEiJ_G0014671	unclassified non-coding RNA gene	ChrX:112629350-112631882 (-)
WSB/EiJ	MGP_WSBEiJ_G0015206	unclassified non-coding RNA gene	ChrX:128856879-128859378 (-)

Homology

• Gene Tree
  4930570D08Rik
  

Expression

• Assay Results
  706
• cDNA Data
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  22

• Ensembl
  ENSMUSG00000084875 (Evidence)
• NCBI Gene
  78225

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084875	Ensembl Gene Model | MGI Sequence Detail	2722	C57BL/6J
transcript	ENSMUST00000373540	Ensembl | MGI Sequence Detail	540	Not Applicable

Molecular
Reagents

• All nucleic 1

  cDNA 1

References

• Summaries
  All 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for 4930570D08Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr164119	ChrX:132801958-132801968 (-)	40 bp
Tssr164118	ChrX:132800922-132800947 (-)	1,068 bp