3010001F23Rik Gene Detail

Summary

• Symbol
  3010001F23Rik
• Name
  RIKEN cDNA 3010001F23 gene

• Feature Type
  lncRNA gene
• IDs
  MGI:1922943
  NCBI Gene: 75693
• Alliance
  gene page

Location &
Maps

• Sequence Map
  ChrX:151151569-151199694 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 68.46 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  64 from dbSNP Build 142
• Strain Annotations
  17

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922943	lncRNA gene	ChrX:151151568-151199698 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0015796	unclassified non-coding RNA gene	ChrX:150134960-150172301 (+)
A/J	MGP_AJ_G0015771	unclassified non-coding RNA gene	ChrX:149321400-149352260 (+)
AKR/J	MGP_AKRJ_G0015736	unclassified non-coding RNA gene	ChrX:154163456-154201568 (+)
BALB/cJ	MGP_BALBcJ_G0015734	unclassified non-coding RNA gene	ChrX:147509801-147544163 (+)
C3H/HeJ	MGP_C3HHeJ_G0015553	unclassified non-coding RNA gene	ChrX:150347355-150425937 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0016189	unclassified non-coding RNA gene	ChrX:154408944-154460912 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	MGP_CASTEiJ_G0015112	unclassified non-coding RNA gene	ChrX:129773377-129810888 (+)
CBA/J	MGP_CBAJ_G0015533	unclassified non-coding RNA gene	ChrX:158953074-159040339 (+)
DBA/2J	MGP_DBA2J_G0015631	unclassified non-coding RNA gene	ChrX:148381529-148414759 (+)
FVB/NJ	MGP_FVBNJ_G0015636	unclassified non-coding RNA gene	ChrX:147518665-147578295 (+)
LP/J	MGP_LPJ_G0015714	unclassified non-coding RNA gene	ChrX:151238855-151279937 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0015661	unclassified non-coding RNA gene	ChrX:167100515-167166559 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0016234	unclassified non-coding RNA gene	ChrX:149662327-149698091 (+)
PWK/PhJ	MGP_PWKPhJ_G0014891	unclassified non-coding RNA gene	ChrX:126707150-126776424 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0014677	unclassified non-coding RNA gene	ChrX:130223496-130256183 (+)
WSB/EiJ	MGP_WSBEiJ_G0015212	unclassified non-coding RNA gene	ChrX:147713061-147755416 (+)

Homology

• Gene Tree
  3010001F23Rik
  

Gene Ontology
(GO)
Classifications

Expression

• Assay Results
  706
• cDNA Data
  5

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  2

• Ensembl
  ENSMUSG00000084885 (Evidence)
• NCBI Gene
  75693

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000084885	Ensembl Gene Model | MGI Sequence Detail	48126	C57BL/6J
transcript	ENSMUST00000130625	Ensembl | MGI Sequence Detail	876	Not Applicable

Molecular
Reagents

• All nucleic 5

  cDNA 5

  
  

  Microarray probesets 1

References

• Summaries
  All 10
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573