Tslrn1 Gene Detail

Summary

• Symbol
  Tslrn1
• Name
  testis specific long noncoding RNA 1
• Synonyms
  1700019B21Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1922795
  NCBI Gene: 75545
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:61554145-61570617 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 34.57 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  636 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922795	lncRNA gene	ChrX:61554135-61598538 (-)
129S1/SvImJ	ENSMUSG00200015966	lncRNA gene	ChrX:43811330-43827800 (-)
A/J	ENSMUSG00195009533	lncRNA gene	ChrX:47331322-47347788 (-)
AKR/J	ENSMUSG00220024437	lncRNA gene	ChrX:42901513-42917987 (-)
BALB/cJ	ENSMUSG00180006732	lncRNA gene	ChrX:43952408-43968874 (-)
C3H/HeJ	ENSMUSG00175009232	lncRNA gene	ChrX:47512488-47528951 (-)
C57BL/6NJ	ENSMUSG00215008703	lncRNA gene	ChrX:44122239-44138718 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0006865	lincRNA gene	ChrX:57772794-57778477 (-)
CAST/EiJ	ENSTCUG00005020130	lncRNA gene	ChrX:45671978-45710604 (-)
CBA/J	ENSMUSG00210018680	lncRNA gene	ChrX:44317144-44333617 (-)
DBA/2J	ENSMUSG00185035746	lncRNA gene	ChrX:56599854-56616308 (-)
FVB/NJ	ENSMUSG00205009512	lncRNA gene	ChrX:43935247-43951720 (-)
JF1/MsJ	ENSUMUG00000026865	lncRNA gene	ChrX:77505196-77539861 (-)
LP/J	ENSMUSG00230019252	lncRNA gene	ChrX:63156740-63173211 (-)
NOD/ShiLtJ	ENSMUSG00190013637	lncRNA gene	ChrX:43619624-43636075 (-)
NZO/HlLtJ	ENSMUSG00225032413	lncRNA gene	ChrX:68402691-68419152 (-)
PWK/PhJ	ENSLUMG00010027130	lncRNA gene	ChrX:43450103-43505949 (-)
SPRET/EiJ	ENSMSPG00010004702	lncRNA gene	ChrX:46197584-46240578 (-)
WSB/EiJ	ENSIUOG00005012239	lncRNA gene	ChrX:44657369-44679912 (-)

Homology

• Gene Tree
  Tslrn1
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 2 alleles in 2 genetic backgrounds
  2 phenotypes from multigenic genotypes
  2 phenotype references
  

• All Mutations and Alleles
  3
• Endonuclease-mediated
  2
• Gene trapped
  1
• Find Mice (IMSR)
  1 strains or lines available

In male mice, knockout reduces sperm counts by about 20%.

Expression

• Assay Results
  604
• Tissues
  4
• cDNA Data
  2
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  54
• RefSeq
  2

• Ensembl
  ENSMUSG00000085757 (Evidence)
• NCBI Gene
  75545

Representative Sequences			Length	Strain/Species
genomic	75545	NCBI Gene Model | MGI Sequence Detail	16473	C57BL/6J
transcript	NR_045442	RefSeq | MGI Sequence Detail	747	C57BL/6

Molecular
Reagents

• All nucleic 3

  cDNA 2

  Primer pair 1

Other
Accession IDs

MGI:5904337

References

• Summaries
  All 11

  Developmental Gene Expression 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:245211 Wichman L, et al., Dynamic expression of long noncoding RNAs reveals their potential roles in spermatogenesis and fertility. Biol Reprod. 2017 Aug 01;97(2):313-323

TSS for Tslrn1:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr163498	ChrX:61559672-61559718 (-)	10,922 bp