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Cypt1 Gene Detail
Summary
  • Symbol
    Cypt1
  • Name
    cysteine-rich perinuclear theca 1
  • Synonyms
    4931420D14Rik, Ckt1r3, CYPT1, Cypt5, Cypt6, TISP55
  • Feature Type
    protein coding gene
  • IDs
    MGI:3616441
    NCBI Gene: 66742
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:16389108-16389928 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 11.68 cM, cytoband A1.3
  • Mapping Data
    4 experiments
Strain
Comparison
more
  • SNPs within 2kb
    127 from dbSNP Build 142
  • Strain Annotations
    15
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_3616441
 protein coding gene ChrX:16389108-16389930 (+)
129S1/SvImJ ENSMUSG00200015479
 protein coding gene ChrX:11139951-11140771 (+)
A/J ENSMUSG00195007214
 protein coding gene ChrX:11123665-11124485 (+)
AKR/J ENSMUSG00220017919
 protein coding gene ChrX:10660382-10661202 (+)
BALB/cJ ENSMUSG00180022125
 protein coding gene ChrX:11117163-11117983 (+)
C3H/HeJ ENSMUSG00175029061
 protein coding gene ChrX:11139661-11140481 (+)
C57BL/6NJ ENSMUSG00215016796
 protein coding gene ChrX:11739480-11740300 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0032947
 protein coding gene ChrX:10034838-10035679 (+)
CAST/EiJ no annotation
CBA/J ENSMUSG00210020341
 protein coding gene ChrX:11180821-11181641 (+)
DBA/2J ENSMUSG00185034532
 protein coding gene ChrX:17781391-17782211 (+)
FVB/NJ ENSMUSG00205018827
 protein coding gene ChrX:10829417-10830237 (+)
JF1/MsJ no annotation
LP/J ENSMUSG00230005980
 protein coding gene ChrX:22350978-22351798 (+)
NOD/ShiLtJ ENSMUSG00190024032
 protein coding gene ChrX:11150043-11150863 (+)
NZO/HlLtJ ENSMUSG00225033516
 protein coding gene ChrX:27585476-27586296 (+)
PWK/PhJ no annotation
SPRET/EiJ ENSMSPG00010010383
 protein coding gene ChrX:12047130-12047957 (+)
WSB/EiJ no annotation



Homology
less
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    6
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000023257 Ensembl Gene Model | MGI Sequence Detail 821 C57BL/6J ±  kb
transcript ENSMUST00000024026 Ensembl | MGI Sequence Detail 673 Not Applicable  
polypeptide ENSMUSP00000024026 Ensembl | MGI Sequence Detail 173 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    1 Sequence
Molecular
Reagents
less
  • All nucleic 6
    cDNA 6

    Microarray probesets 2
Other
Accession IDs
less
MGI:1913992, MGI:3616444
References
more
  • Summaries
    All 20
    Gene Ontology 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory