H2al3 Gene Detail

Summary

• Symbol
  H2al3
• Name
  H2A histone family member L3
• Synonyms
  4930557A04Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1922521
  NCBI Gene: 385317
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  ChrX:9715942-9716491 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 4.62 cM, cytoband A1.2
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  84 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922521	protein coding gene	ChrX:9715942-9716494 (+)
129S1/SvImJ	ENSMUSG00200032801	protein coding gene	ChrX:4467829-4468381 (+)
A/J	ENSMUSG00195036867	protein coding gene	ChrX:4435977-4436529 (+)
AKR/J	ENSMUSG00220031421	protein coding gene	ChrX:3976387-3976939 (+)
BALB/cJ	ENSMUSG00180029772	protein coding gene	ChrX:4433733-4434285 (+)
C3H/HeJ	ENSMUSG00175030257	protein coding gene	ChrX:4450562-4451114 (+)
C57BL/6NJ	ENSMUSG00215036975	protein coding gene	ChrX:5106472-5107024 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0032928	protein coding gene	ChrX:3822166-3822713 (+)
CAST/EiJ	ENSTCUG00005031040	protein coding gene	ChrX:4431922-4432474 (+)
CBA/J	ENSMUSG00210037216	protein coding gene	ChrX:4499210-4499762 (+)
DBA/2J	ENSMUSG00185035322	protein coding gene	ChrX:11091624-11092176 (+)
FVB/NJ	ENSMUSG00205024924	protein coding gene	ChrX:4185729-4186281 (+)
JF1/MsJ	ENSUMUG00000019826	protein coding gene	ChrX:24959298-24959851 (+)
LP/J	ENSMUSG00230030288	protein coding gene	ChrX:15659116-15659668 (+)
NOD/ShiLtJ	ENSMUSG00190029012	protein coding gene	ChrX:4461157-4461709 (+)
NZO/HlLtJ	ENSMUSG00225033113	protein coding gene	ChrX:20877442-20877994 (+)
PWK/PhJ	ENSLUMG00010029939	protein coding gene	ChrX:4375472-4376024 (+)
SPRET/EiJ	ENSMSPG00010022418	protein coding gene	ChrX:5316206-5316757 (+)
WSB/EiJ	ENSIUOG00005016458	protein coding gene	ChrX:1155400-1155952 (+)

Homology

• Human Ortholog
  H2AL3, H2A.L variant histone 3

• Vertebrate Orthologs
  1

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  H2AL3, H2A.L variant histone 3
  
• Synonyms
  H2AL1RP, H2A.L.3
• Links
  HGNC:53960

  NCBI Gene ID: 115482686

  UniProt: A0A3B3IU63

  
  
• Chr Location
  chrX:37994272-37994904 (+)  GRCh38

---

• MGI Vertebrate Homology
  H2al3 stringent orthology
  1 human;1 mouse
  
• HCOP
  vertebrate homology predictions: H2AL3
• Gene Tree
  H2al3
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  APF
• Find Mice (IMSR)
  0 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  1
• GO References
  1

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  3
• UniProt
  2
• CCDS
  CCDS52999.1

• Ensembl
  ENSMUSG00000048994 (Evidence)
• NCBI Gene
  385317

Representative Sequences			Length	Strain/Species
genomic	385317	NCBI Gene Model | MGI Sequence Detail	550	C57BL/6J
transcript	NM_029229	RefSeq | MGI Sequence Detail	550	C57BL/6
polypeptide	NP_083505	RefSeq | MGI Sequence Detail	128	C57BL/6

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR009072 Histone-fold

Molecular
Reagents

• All nucleic 8

  cDNA 8

  
  

  Microarray probesets 2

References

• Summaries
  All 17

  Gene Ontology 1
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:80000 The FANTOM Consortium and The RIKEN Genome Exploration Research Group Phase I & II Team, Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Nature. 2002;420:563-573

TSS for H2al3:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr160529	ChrX:9715946-9715949 (+)	6 bp