2010204K13Rik Gene Detail

Summary

• Symbol
  2010204K13Rik
• Name
  RIKEN cDNA 2010204K13 gene
• Synonyms
  0610010M13Rik

• Feature Type
  lncRNA gene
• IDs
  MGI:1922859
  NCBI Gene: 68355
• Alliance
  genome feature page
• Transcription Start Sites
  10 TSS

Location &
Maps

• Sequence Map
  ChrX:7278056-7289227 bp, - strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 3.33 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  221 from dbSNP Build 142
• Strain Annotations
  31

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1922859	lncRNA gene	ChrX:7214684-7340328 (-)
129S1/SvImJ	ENSMUSG00200034978	lncRNA gene	ChrX:1978645-2011969 (-)
129S1/SvImJ	ENSMUSG00200030748	protein coding gene	ChrX:1978710-1991020 (-)
A/J	ENSMUSG00195040784	lncRNA gene	ChrX:2001593-2034916 (-)
A/J	ENSMUSG00195039330	protein coding gene	ChrX:2001658-2013969 (-)
AKR/J	ENSMUSG00220034473	lncRNA gene	ChrX:1982931-2016254 (-)
AKR/J	ENSMUSG00220031357	protein coding gene	ChrX:1982996-1995315 (-)
BALB/cJ	ENSMUSG00180030269	lncRNA gene	ChrX:1978217-2011539 (-)
BALB/cJ	ENSMUSG00180029141	protein coding gene	ChrX:1978282-1990592 (-)
C3H/HeJ	ENSMUSG00175030805	protein coding gene	ChrX:2013364-2025674 (-)
C3H/HeJ	ENSMUSG00175033884	lncRNA gene	ChrX:2013299-2046621 (-)
C57BL/6NJ	ENSMUSG00215036922	protein coding gene	ChrX:2677189-2689499 (-)
C57BL/6NJ	ENSMUSG00215041000	lncRNA gene	ChrX:2677124-2710450 (-)
CAROLI/EiJ	MGP_CAROLIEiJ_G0013884	unclassified non-coding RNA gene	ChrX:1553217-1585868 (-)
CAST/EiJ	ENSTCUG00005033654	lncRNA gene	ChrX:1950871-1983898 (-)
CBA/J	ENSMUSG00210041895	lncRNA gene	ChrX:2030138-2063464 (-)
CBA/J	ENSMUSG00210032039	protein coding gene	ChrX:2030203-2042513 (-)
DBA/2J	ENSMUSG00185027257	protein coding gene	ChrX:8647365-8659675 (-)
DBA/2J	ENSMUSG00185029465	lncRNA gene	ChrX:8647300-8680622 (-)
FVB/NJ	ENSMUSG00205029216	protein coding gene	ChrX:2023982-2036292 (-)
FVB/NJ	ENSMUSG00205033568	lncRNA gene	ChrX:2023917-2057240 (-)
JF1/MsJ	ENSUMUG00000042018	lncRNA gene	ChrX:22526304-22559739 (-)
LP/J	ENSMUSG00230033260	lncRNA gene	ChrX:13167583-13200905 (-)
LP/J	ENSMUSG00230026701	protein coding gene	ChrX:13167648-13179958 (-)
NOD/ShiLtJ	ENSMUSG00190033544	protein coding gene	ChrX:1997914-2010233 (-)
NOD/ShiLtJ	ENSMUSG00190042685	lncRNA gene	ChrX:1997849-2031172 (-)
NZO/HlLtJ	ENSMUSG00225046112	lncRNA gene	ChrX:18433045-18466367 (-)
NZO/HlLtJ	ENSMUSG00225045250	protein coding gene	ChrX:18433110-18445420 (-)
PWK/PhJ	ENSLUMG00010036169	lncRNA gene	ChrX:1987577-2020984 (-)
SPRET/EiJ	ENSMSPG00010025894	lncRNA gene	ChrX:2020818-2052941 (-)
WSB/EiJ	ENSIUOG00005032858	lncRNA gene	ChrX:16490589-16523917 (+)

Homology

• Gene Tree
  2010204K13Rik
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  5 phenotype references
  

• All Mutations and Alleles
  28
• Gene trapped
  28
• Find Mice (IMSR)
  18 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  8

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  67
• RefSeq
  2
• UniProt
  1

• Ensembl
  ENSMUSG00000063018 (Evidence)
• NCBI Gene
  68355

Representative Sequences			Length	Strain/Species
genomic	68355	NCBI Gene Model | MGI Sequence Detail	11172	C57BL/6J
transcript	NR_027924	RefSeq | MGI Sequence Detail	826	C57BL/6
polypeptide	Q9JM45	UniProt | EBI | MGI Sequence Detail	83	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 9

  cDNA 9

  
  

  Microarray probesets 2

Other
Accession IDs

MGI:1915605

References

• Summaries
  All 20

  Phenotypes 5
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 2010204K13Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr162789	ChrX:7289216-7289235 (-)	1 bp
Tssr162788	ChrX:7289188-7289213 (-)	26 bp
Tssr162787	ChrX:7289169-7289180 (-)	52 bp
Tssr162786	ChrX:7287362-7287371 (-)	1,860 bp
Tssr162785	ChrX:7287326-7287360 (-)	1,884 bp
Tssr162784	ChrX:7287278-7287324 (-)	1,926 bp
Tssr162783	ChrX:7279013-7279027 (-)	10,207 bp
Tssr162782	ChrX:7278995-7279011 (-)	10,224 bp
Tssr5584	ChrX:7278983-7278986 (-)	10,242 bp
Tssr162781	ChrX:7278973-7278980 (-)	10,250 bp