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Vcf2 Gene Detail
Summary
  • Symbol
    Vcf2
  • Name
    VCP nuclear cofactor family member 2
  • Synonyms
    2700081K05Rik, 6330540D07Rik, Tmem29
  • Feature Type
    protein coding gene
  • IDs
    MGI:1923420
    NCBI Gene: 382245
  • Alliance
  • Transcription Start Sites
    9 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:149180769-149242150 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
  • Genetic Map
    Chromosome X, 68.46 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    170 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1923420
protein coding gene ChrX:149180769-149250327 (-)
129S1/SvImJ MGP_129S1SvImJ_G0036167
protein coding gene ChrX:148116739-148178347 (-)
A/J MGP_AJ_G0036143
protein coding gene ChrX:147318964-147388024 (-)
AKR/J MGP_AKRJ_G0036069
protein coding gene ChrX:152127626-152192416 (-)
BALB/cJ MGP_BALBcJ_G0036134
protein coding gene ChrX:145522701-145585437 (-)
C3H/HeJ MGP_C3HHeJ_G0035842
protein coding gene ChrX:148322194-148390297 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036659
protein coding gene ChrX:152282691-152347650 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033483
protein coding gene ChrX:138905364-138964356 (-)
CAST/EiJ MGP_CASTEiJ_G0035133
protein coding gene ChrX:127781954-127845881 (-)
CBA/J MGP_CBAJ_G0035819
protein coding gene ChrX:156837213-156896169 (-)
DBA/2J MGP_DBA2J_G0035977
protein coding gene ChrX:146430572-146492501 (-)
FVB/NJ MGP_FVBNJ_G0035911
protein coding gene ChrX:145588015-145649863 (-)
LP/J MGP_LPJ_G0036068
protein coding gene ChrX:149180673-149250529 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035947
protein coding gene ChrX:164892472-164954583 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036694
protein coding gene ChrX:147646076-147705506 (-)
PWK/PhJ MGP_PWKPhJ_G0034827
protein coding gene ChrX:124761454-124824927 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034653
protein coding gene ChrX:128246952-128312672 (-)
WSB/EiJ MGP_WSBEiJ_G0035268
protein coding gene ChrX:145718271-145782385 (-)



Homology
more
  • Human Ortholog
    FAM156A, family with sequence similarity 156 member A
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM156A, family with sequence similarity 156 member A
  • Synonyms
    PRO0659, TMEM29
  • Links
    NCBI Gene ID: 29057
    neXtProt AC: NX_Q8NDB6
    UniProt: Q8NDB6

  • Chr Location
    Xp11.22

  • Human Ortholog
    FAM156B, family with sequence similarity 156 member B
  • Synonyms
    TMEM29B
  • Links
    NCBI Gene ID: 727866
    neXtProt AC: NX_Q8NDB6
    UniProt: Q8NDB6

  • Chr Location
    Xp11.22

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    6 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • cDNA Data
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000041353 Ensembl Gene Model | MGI Sequence Detail 61382 C57BL/6J ±  kb
transcript ENSMUST00000173996 Ensembl | MGI Sequence Detail 1433 Not Applicable  
polypeptide ENSMUSP00000134594 Ensembl | MGI Sequence Detail 204 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    3 Sequences
  • InterPro Domains
    IPR029096 Developmental pluripotency-associated protein 3
    IPR029222 VCF1/2-like
Molecular
Reagents
less
  • All nucleic 43
    cDNA 43

    Microarray probesets 4
Other
Accession IDs
less
MGI:1919903
References
more
  • Summaries
    All 27
    Gene Ontology 1
    Phenotypes 6
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:317250 Tsang HW, et al., Transmembrane 29 (Tmem29), a Newly Identified Molecule Showed Downregulation in Hypoxic-Ischemic Brain Damage. NeuroSci. 2022;3(1):41-51

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Funding Information
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last database update
05/14/2024
MGI 6.23
The Jackson Laboratory