4933401B06Rik Pseudogene Detail

Summary

• Symbol
  4933401B06Rik
• Name
  RIKEN cDNA 4933401B06 gene

• Feature Type
  pseudogene
• IDs
  MGI:1918261
  NCBI Gene: 71011
• Alliance
  genome feature page
• Transcription Start Sites
  2 TSS

Location &
Maps

• Sequence Map
  ChrX:106586197-106587351 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 47.56 cM, cytoband D
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  121 from dbSNP Build 142
• Strain Annotations
  19

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1918261	pseudogene	ChrX:106586188-106587406 (+)
129S1/SvImJ	ENSMUSG00200039208	pseudogene	ChrX:88369621-88370839 (+)
A/J	ENSMUSG00195040894	pseudogene	ChrX:92100192-92101410 (+)
AKR/J	ENSMUSG00220040101	pseudogene	ChrX:86829821-86831039 (+)
BALB/cJ	ENSMUSG00180045126	pseudogene	ChrX:88766244-88767462 (+)
C3H/HeJ	ENSMUSG00175045518	pseudogene	ChrX:92342071-92343289 (+)
C57BL/6NJ	ENSMUSG00215047732	pseudogene	ChrX:88995516-88996734 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0036925	pseudogene	ChrX:101470677-101471890 (+)
CAST/EiJ	ENSTCUG00005042111	pseudogene	ChrX:89764802-89766020 (+)
CBA/J	ENSMUSG00210044764	pseudogene	ChrX:89240888-89242106 (+)
DBA/2J	ENSMUSG00185045747	pseudogene	ChrX:101721113-101722331 (+)
FVB/NJ	ENSMUSG00205036621	pseudogene	ChrX:88306590-88307808 (+)
JF1/MsJ	ENSUMUG00000016964	pseudogene	ChrX:122293736-122294954 (+)
LP/J	ENSMUSG00230043716	pseudogene	ChrX:108366930-108368148 (+)
NOD/ShiLtJ	ENSMUSG00190042835	pseudogene	ChrX:88446252-88447470 (+)
NZO/HlLtJ	ENSMUSG00225040693	pseudogene	ChrX:113502996-113504214 (+)
PWK/PhJ	ENSLUMG00010040730	pseudogene	ChrX:87550248-87551466 (+)
SPRET/EiJ	ENSMSPG00010040484	pseudogene	ChrX:91881973-91883191 (+)
WSB/EiJ	ENSIUOG00005045574	pseudogene	ChrX:88943550-88944768 (+)

Homology

• Gene Tree
  4933401B06Rik
  

Expression

• Assay Results
  597
• cDNA Data
  3

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  26
• RefSeq
  2

• Ensembl
  ENSMUSG00000055700 (Evidence)
• NCBI Gene
  71011

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000055700	Ensembl Gene Model | MGI Sequence Detail	1155	C57BL/6J
transcript	ENSMUST00000139758	Ensembl | MGI Sequence Detail	1155	Not Applicable

Molecular
Reagents

• All nucleic 3

  cDNA 3

  
  

  Microarray probesets 2

References

• Summaries
  All 14
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582

TSS for 4933401B06Rik:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161829	ChrX:106586171-106586183 (+)	-20 bp
Tssr161830	ChrX:106586193-106586201 (+)	0 bp