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Cypt3 Gene Detail
Summary
  • Symbol
    Cypt3
  • Name
    cysteine-rich perinuclear theca 3
  • Synonyms
    1700006H02Rik, Ckt1r1
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916611
    NCBI Gene: 69361
  • Alliance
    genome feature page
  • Transcription Start Sites
    1 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:152341589-152342425 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 68.65 cM, cytoband F3
  • Mapping Data
    3 experiments
Strain
Comparison
more
  • SNPs within 2kb
    98 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916611
 protein coding gene ChrX:152341589-152342431 (+)
129S1/SvImJ ENSMUSG00200030127
 protein coding gene ChrX:129139092-129139928 (+)
A/J ENSMUSG00195036945
 protein coding gene ChrX:134149478-134150314 (+)
AKR/J ENSMUSG00220033279
 protein coding gene ChrX:126096607-126097443 (+)
BALB/cJ ENSMUSG00180037545
 protein coding gene ChrX:129520057-129520893 (+)
C3H/HeJ ENSMUSG00175027631
 protein coding gene ChrX:134094410-134095246 (+)
C57BL/6NJ ENSMUSG00215015582
 protein coding gene ChrX:129833656-129834492 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033512
 protein coding gene ChrX:142226715-142227564 (+)
CAST/EiJ ENSTCUG00005033434
 protein coding gene ChrX:131847327-131848163 (+)
CBA/J ENSMUSG00210032895
 protein coding gene ChrX:131542982-131543818 (+)
DBA/2J ENSMUSG00185044720
 protein coding gene ChrX:146364453-146365289 (+)
FVB/NJ ENSMUSG00205015277
 protein coding gene ChrX:130062402-130063238 (+)
JF1/MsJ ENSUMUG00000029023
 protein coding gene ChrX:166537646-166538482 (+)
LP/J ENSMUSG00230011965
 protein coding gene ChrX:153147871-153148707 (+)
NOD/ShiLtJ ENSMUSG00190033160
 protein coding gene ChrX:130581471-130582307 (+)
NZO/HlLtJ ENSMUSG00225042190
 protein coding gene ChrX:156639870-156640706 (+)
PWK/PhJ ENSLUMG00010030611
 protein coding gene ChrX:128064522-128065358 (+)
SPRET/EiJ ENSMSPG00010039518
 protein coding gene ChrX:132944439-132945265 (+)
WSB/EiJ ENSIUOG00005039450
 protein coding gene ChrX:131016721-131017557 (+)



Homology
less
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    1 phenotype reference
Gene Ontology
(GO)
Classifications
less
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

No experimental evidence to support Cellular Component annotation, following literature review. See J:73796.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    597
  • cDNA Data
    5
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000048573 Ensembl Gene Model | MGI Sequence Detail 837 C57BL/6J ±  kb
transcript ENSMUST00000112573 Ensembl | MGI Sequence Detail 669 Not Applicable  
polypeptide ENSMUSP00000108192 Ensembl | MGI Sequence Detail 174 Not Applicable  
For the selected sequence
Protein
Information
less
  • UniProt
    7 Sequences
Molecular
Reagents
less
  • All nucleic 5
    cDNA 5

    Microarray probesets 1
References
more
  • Summaries
    All 17
    Phenotypes 1
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:105251 Hansen MA, et al., Identification and expression profiling of 10 novel spermatid expressed CYPT genes. Mol Reprod Dev. 2006 Feb 13;73(5):568-579
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
09/08/2026
MGI 6.24 		The Jackson Laboratory