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Cylc1 Gene Detail
Summary
  • Symbol
    Cylc1
  • Name
    cylicin, basic protein of sperm head cytoskeleton 1
  • Synonyms
    4930401M13Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1914657
    NCBI Gene: 67407
  • Alliance
    gene page
Location &
Maps
more
  • Sequence Map
    ChrX:110154024-110169624 bp, + strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 48.20 cM, cytoband D
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    17 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1914657
 protein coding gene ChrX:110154024-110169731 (+)
129S1/SvImJ MGP_129S1SvImJ_G0036025
 protein coding gene ChrX:107965407-107978571 (+)
A/J MGP_AJ_G0036005
 protein coding gene ChrX:107861605-107880276 (+)
AKR/J MGP_AKRJ_G0035924
 protein coding gene ChrX:111184800-111203384 (+)
BALB/cJ MGP_BALBcJ_G0035996
 protein coding gene ChrX:106481147-106494103 (+)
C3H/HeJ MGP_C3HHeJ_G0035702
 protein coding gene ChrX:108417685-108438558 (+)
C57BL/6NJ MGP_C57BL6NJ_G0036521
 protein coding gene ChrX:111100978-111118818 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0033349
 protein coding gene ChrX:104692349-104703528 (+)
CAST/EiJ MGP_CASTEiJ_G0034988
 protein coding gene ChrX:92357320-92369926 (+)
CBA/J MGP_CBAJ_G0035678
 protein coding gene ChrX:114617594-114627779 (+)
DBA/2J MGP_DBA2J_G0035831
 protein coding gene ChrX:106997539-107012337 (+)
FVB/NJ MGP_FVBNJ_G0035772
 protein coding gene ChrX:106369551-106391942 (+)
LP/J MGP_LPJ_G0035924
 protein coding gene ChrX:108867570-108880179 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0035803
 protein coding gene ChrX:119886153-119900270 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0036548
 protein coding gene ChrX:107516076-107529659 (+)
PWK/PhJ MGP_PWKPhJ_G0034684
 protein coding gene ChrX:89886317-89900328 (+)
SPRET/EiJ MGP_SPRETEiJ_G0034513
 protein coding gene ChrX:93195135-93214724 (+)
WSB/EiJ MGP_WSBEiJ_G0035126
 protein coding gene ChrX:106210704-106223632 (+)



Homology
more
  • Human Ortholog
    CYLC1, cylicin 1
  • Vertebrate Orthologs
    2
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    CYLC1, cylicin 1
  • Synonyms
    CYCL1
  • Links
    NCBI Gene ID: 1538
    neXtProt AC: NX_P35663
    UniProt: P35663

  • Chr Location
    Xq21.1; chrX:83861126-83886699 (+)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotype references
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    2
  • GO References
    2
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    3
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 67407 NCBI Gene Model | MGI Sequence Detail 15601 C57BL/6J ±  kb
transcript NM_026134 RefSeq | MGI Sequence Detail 1969 C57BL/6  
polypeptide NP_080410 RefSeq | MGI Sequence Detail 642 C57BL/6  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 3
    cDNA 3

    Microarray probesets 2
References
more
  • Summaries
    All 19
    Gene Ontology 2
    Phenotypes 2
  • Earliest
    J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
  • Latest
    J:343074 Schneider S, et al., Cylicins are a structural component of the sperm calyx being indispensable for male fertility in mice and human. Elife. 2023 Nov 28;12
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
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Send questions and comments to User Support. 		last database update
04/30/2024
MGI 6.23 		The Jackson Laboratory