Ctag2 Gene Detail

Summary

• Symbol
  Ctag2
• Name
  cancer/testis antigen 2
• Synonyms
  1700030B21Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1917312
  NCBI Gene: 70062
• Alliance
  genome feature page
• Transcription Start Sites
  3 TSS

Location &
Maps

• Sequence Map
  ChrX:64091250-64092620 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 34.64 cM, cytoband A5
• Mapping Data
  2 experiments

Strain
Comparison

• SNPs within 2kb
  112 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1917312	protein coding gene	ChrX:64091250-64092623 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035767	protein coding gene	ChrX:60588433-60592578 (+)
A/J	MGP_AJ_G0035749	protein coding gene	ChrX:60765666-60767036 (+)
AKR/J	MGP_AKRJ_G0035669	protein coding gene	ChrX:62440093-62441463 (+)
BALB/cJ	MGP_BALBcJ_G0035736	protein coding gene	ChrX:60107757-60111999 (+)
C3H/HeJ	MGP_C3HHeJ_G0035439	protein coding gene	ChrX:61195743-61197113 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036265	protein coding gene	ChrX:62389281-62390651 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033117	protein coding gene	ChrX:60334929-60336251 (+)
CAST/EiJ	MGP_CASTEiJ_G0034731	protein coding gene	ChrX:46738425-46739795 (+)
CBA/J	MGP_CBAJ_G0035413	protein coding gene	ChrX:64160592-64161962 (+)
DBA/2J	MGP_DBA2J_G0035567	protein coding gene	ChrX:60311287-60312657 (+)
FVB/NJ	MGP_FVBNJ_G0035517	protein coding gene	ChrX:59841227-59842597 (+)
LP/J	MGP_LPJ_G0035655	protein coding gene	ChrX:61309765-61311135 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035553	protein coding gene	ChrX:66044441-66045811 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036281	protein coding gene	ChrX:60513735-60515105 (+)
PWK/PhJ	MGP_PWKPhJ_G0034427	protein coding gene	ChrX:44929032-44930402 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034270	protein coding gene	ChrX:47692865-47694235 (+)
WSB/EiJ	MGP_WSBEiJ_G0034874	protein coding gene	ChrX:59959442-59960812 (+)

Homology

• MGI Vertebrate Homology
  Ctag2 stringent orthology
  1 mouse;1 rat
  
• Gene Tree
  Ctag2
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  1 phenotype from 1 allele in 1 genetic background
  3 phenotype references
  

• All Mutations and Alleles
  4
• Endonuclease-mediated
  1
• Spontaneous
  1
• Targeted
  2
• Find Mice (IMSR)
  2 strains or lines available
• Comparison Matrix
  Gene Expression + Phenotype

Knockout does not affect spermatogenesis or male fertility.

Expression

• Assay Results
  706
• cDNA Data
  4

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  29
• RefSeq
  2
• UniProt
  2
• CCDS
  CCDS30168.1

• Ensembl
  ENSMUSG00000031181 (Evidence)
• NCBI Gene
  70062

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000031181	Ensembl Gene Model | MGI Sequence Detail	1371	C57BL/6J
transcript	ENSMUST00000033524	Ensembl | MGI Sequence Detail	854	Not Applicable
polypeptide	ENSMUSP00000033524	Ensembl | MGI Sequence Detail	219	Not Applicable

Protein
Information

• UniProt
  2 Sequences
• InterPro Domains
  IPR015419 CTAG/Pcc1 family

Molecular
Reagents

• All nucleic 4

  cDNA 4

  
  

  Microarray probesets 3

References

• Summaries
  All 19

  Phenotypes 3
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:292550 Morimoto K, et al., Reverse genetics reveals single gene of every candidate on Hybrid sterility, X Chromosome QTL 2 (Hstx2) are dispensable for spermatogenesis. Sci Rep. 2020 Jun 3;10(1):9060

TSS for Ctag2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161121	ChrX:64091228-64091235 (+)	-18 bp
Tssr161122	ChrX:64091244-64091255 (+)	0 bp
Tssr161123	ChrX:64091277-64091289 (+)	33 bp