About   Help   FAQ
Fam3a Gene Detail
Summary
  • Symbol
    Fam3a
  • Name
    FAM3 metabolism regulating signaling molecule A
  • Synonyms
    1810037C20Rik
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913544
    NCBI Gene: 66294
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    ChrX:73428325-73436878 bp, - strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome X, 38.00 cM, cytoband A6
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    200 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913544
 protein coding gene ChrX:73427816-73436878 (-)
129S1/SvImJ MGP_129S1SvImJ_G0035846
 protein coding gene ChrX:70191524-70201491 (-)
A/J MGP_AJ_G0035827
 protein coding gene ChrX:70372683-70381240 (-)
AKR/J MGP_AKRJ_G0035752
 protein coding gene ChrX:72271080-72279637 (-)
BALB/cJ MGP_BALBcJ_G0035812
 protein coding gene ChrX:69397721-69406495 (-)
C3H/HeJ MGP_C3HHeJ_G0035517
 protein coding gene ChrX:70664419-70672974 (-)
C57BL/6NJ MGP_C57BL6NJ_G0036342
 protein coding gene ChrX:72357947-72366500 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0033186
 protein coding gene ChrX:69435642-69444202 (-)
CAST/EiJ MGP_CASTEiJ_G0034808
 protein coding gene ChrX:56040787-56050187 (-)
CBA/J MGP_CBAJ_G0035492
 protein coding gene ChrX:74356259-74365644 (-)
DBA/2J MGP_DBA2J_G0035649
 protein coding gene ChrX:69835162-69844152 (-)
FVB/NJ MGP_FVBNJ_G0035593
 protein coding gene ChrX:69176331-69184878 (-)
LP/J MGP_LPJ_G0035734
 protein coding gene ChrX:70962864-70971490 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0035631
 protein coding gene ChrX:76909352-76917919 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0036364
 protein coding gene ChrX:70005649-70014928 (-)
PWK/PhJ MGP_PWKPhJ_G0034507
 protein coding gene ChrX:54004646-54013210 (-)
SPRET/EiJ MGP_SPRETEiJ_G0034341
 protein coding gene ChrX:56913948-56922734 (-)
WSB/EiJ MGP_WSBEiJ_G0034949
 protein coding gene ChrX:69290607-69299551 (-)



Homology
more
  • Human Ortholog
    FAM3A, FAM3 metabolism regulating signaling molecule A
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    FAM3A, FAM3 metabolism regulating signaling molecule A
  • Synonyms
    2.19, DLD, DXS560S, XAP-7
  • Links
    NCBI Gene ID: 60343
    neXtProt AC: NX_P98173
    UniProt: P98173

  • Chr Location
    Xq28; chrX:154506159-154516242 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    10 phenotypes from 1 allele in 1 genetic background
    12 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous knockout increases liver inflammation and damage after liver ischemia reperfusion injury.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    19
  • GO References
    6
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    706
  • cDNA Data
    40
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000031399 Ensembl Gene Model | MGI Sequence Detail 8554 C57BL/6J ±  kb
    transcript ENSMUST00000114141 Ensembl | MGI Sequence Detail 1243 Not Applicable  
    polypeptide ENSMUSP00000109777 Ensembl | MGI Sequence Detail 237 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 40
      cDNA 40

      Microarray probesets 5
    References
    more
    • Summaries
      All 38
      Gene Ontology 6
      Phenotypes 12
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:332770 Yan H, et al., FAM3A maintains metabolic homeostasis by interacting with F1-ATP synthase to regulate the activity and assembly of ATP synthase. Metabolism. 2022 Dec 5;139:155372
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
    Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
    Send questions and comments to User Support.     		last database update
    03/25/2025
    MGI 6.24     		The Jackson Laboratory