Fthl17a Gene Detail

Summary

• Symbol
  Fthl17a
• Name
  ferritin, heavy polypeptide-like 17, member A
• Synonyms
  1600014K23Rik

• Feature Type
  protein coding gene
• IDs
  MGI:1919246
  NCBI Gene: 71996
• Alliance
  gene page
• Transcription Start Sites
  5 TSS

Location &
Maps

• Sequence Map
  ChrX:84293285-84313894 bp, + strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome X, 39.32 cM, cytoband B
• Mapping Data
  3 experiments

Strain
Comparison

• SNPs within 2kb
  450 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1919246	protein coding gene	ChrX:84293283-84313897 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0035887	protein coding gene	ChrX:81316251-81336931 (+)
A/J	MGP_AJ_G0035872	protein coding gene	ChrX:81407928-81429835 (+)
AKR/J	MGP_AKRJ_G0035790	protein coding gene	ChrX:83576960-83597552 (+)
BALB/cJ	MGP_BALBcJ_G0035853	protein coding gene	ChrX:80168937-80189660 (+)
C3H/HeJ	MGP_C3HHeJ_G0035563	protein coding gene	ChrX:81613450-81634549 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0036384	protein coding gene	ChrX:83836156-83855955 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0033215	protein coding gene	ChrX:80324273-80352352 (+)
CAST/EiJ	MGP_CASTEiJ_G0034852	protein coding gene	ChrX:66600896-66622023 (+)
CBA/J	MGP_CBAJ_G0035538	protein coding gene	ChrX:86091839-86116909 (+)
DBA/2J	MGP_DBA2J_G0035693	protein coding gene	ChrX:80833893-80854620 (+)
FVB/NJ	MGP_FVBNJ_G0035632	protein coding gene	ChrX:80220559-80240142 (+)
LP/J	MGP_LPJ_G0035782	protein coding gene	ChrX:82115171-82136422 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0035669	protein coding gene	ChrX:89564822-89588899 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0036411	protein coding gene	ChrX:81047758-81071827 (+)
PWK/PhJ	MGP_PWKPhJ_G0034550	protein coding gene	ChrX:64634999-64654765 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0034380	protein coding gene	ChrX:67516572-67537887 (+)
WSB/EiJ	MGP_WSBEiJ_G0034991	protein coding gene	ChrX:79953003-79971300 (+)

Homology

• Human Ortholog
  FTH1P19, ferritin heavy chain 1 pseudogene 19

• Vertebrate Orthologs
  5

Vertebrate Orthology Source

Alliance of Genome Resources

• Human Ortholog
  FTH1P19, ferritin heavy chain 1 pseudogene 19
  
• Synonyms
  FTHL19
• Links
  HGNC:33525

  NCBI Gene ID: 389844

  UniProt: P0C7X4

  
  
• Chr Location
  Xp21.1; chrX:37491957-37492720 (+)  GRCh38

---

• Human Ortholog
  FTHL17, ferritin heavy chain like 17
  
• Synonyms
  CT38
• Links
  HGNC:3987

  NCBI Gene ID: 53940

  UniProt: Q9BXU8

  
  
• Chr Location
  Xp21.2; chrX:31071233-31072041 (-)  GRCh38

---

• MGI Vertebrate Homology
  Fthl17a stringent orthology
  2 human;1 mouse;1 rat;2 zebrafish
  
• HCOP
  vertebrate homology predictions: FTH1P19, FTHL17
• Gene Tree
  Fthl17a
  

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  2 phenotype references
  

• All Mutations and Alleles
  2
• Targeted
  2
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  4 strains or lines available

Gene Ontology
(GO)
Classifications

• All GO Annotations
  3
• GO References
  1

Expression

• Assay Results
  706
• cDNA Data
  24
• Literature Summary
  1

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  32
• RefSeq
  4
• UniProt
  1
• CCDS
  CCDS53125.1

• Ensembl
  ENSMUSG00000035491 (Evidence)
• NCBI Gene
  71996

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000035491	Ensembl Gene Model | MGI Sequence Detail	20610	C57BL/6J
transcript	ENSMUST00000048382	Ensembl | MGI Sequence Detail	835	Not Applicable
polypeptide	ENSMUSP00000045007	Ensembl | MGI Sequence Detail	182	Not Applicable

Protein
Information

• UniProt
  1 Sequence
• InterPro Domains
  IPR001519 Ferritin
  IPR008331 Ferritin/DPS protein domain
  IPR012347 Ferritin-like
  IPR009040 Ferritin-like diiron domain
  IPR009078 Ferritin-like superfamily

Molecular
Reagents

• All nucleic 24

  cDNA 24

  
  

  Microarray probesets 3

Other
Accession IDs

MGI:2147874

References

• Summaries
  All 25

  Developmental Gene Expression 1

  Gene Ontology 1

  Phenotypes 2
• Earliest
  J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
• Latest
  J:220468 Walentin K, et al., A Grhl2-dependent gene network controls trophoblast branching morphogenesis. Development. 2015 Mar 15;142(6):1125-36

TSS for Fthl17a:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr161434	ChrX:84293280-84293290 (+)	0 bp
Tssr161435	ChrX:84293315-84293324 (+)	35 bp
Tssr161436	ChrX:84313095-84313110 (+)	19,818 bp
Tssr161437	ChrX:84313113-84313166 (+)	19,855 bp
Tssr161438	ChrX:84313169-84313186 (+)	19,893 bp