Frequently Asked Questions
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Genes, Genome Features & Maps
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How do I ...
- .. search for genes, QTL, or other features in a specific genome interval?
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- .. search for a gene using an Entrez, Ensembl, VEGA, or other accession ID?
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- .. search for all gene trap cell lines associated with a gene or marker?
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- .. retrieve Entrez, Ensembl, VEGA, or other IDs for a list of genes?
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- .. create a genome map from a genomic interval?
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- .. see different gene models along with the MGI-curated representative model?
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- .. find primer sequence for a gene?
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Phenotypes, Alleles & Disease Models
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How do I ...
- .. find mutations in a specific gene?
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- .. find mouse models for a human disease or condition?
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- .. find mutations that cause a specific combination of phenotypes?
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- .. find all of one kind of allele (e.g. cre transgenes, LoxP/Frt-flanked alleles, etc.)?
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- .. find candidate genes for a given phenotype and a specific genome location?
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- .. download all phenotype annotations in MGI?
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- .. find available strains carrying a mutation in a specific gene?
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- .. find a mutant ES cell line?
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Gene Expression
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How do I ...
- .. find expression data for a specific gene and tissue?
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- .. find expression data for a tissue during development?
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- .. find genes expressed in one tissue but not another?
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- .. find references that report expression data for a gene at a specific age?
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- .. find expression data in mouse mutants?
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- .. find and download expression data using BioMart?
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Recombinases
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How do I ...
- .. find existing recombinase-expressing transgenes/knock-ins that have a given promoter (driver)?
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- .. find the promoter (driver) that I am looking for if it is not on the selection list?
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- .. find a recombinase-expressing transgene or knock-in that is expressed in a specific tissue?
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- .. get a full list of all transgenes and knock-ins that express recombinase?
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- .. order mice with a desired recombinase construct?
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GO Functional Annotations
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How do I ...
- .. download all mouse GO annotations?
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- .. find all GO annotations for a specific mouse gene?
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- .. find all mouse genes with shared annotation to a GO term?
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- .. find shared function for a list of specific mouse genes?
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- .. view annotations for mouse/human/rat ortholog sets?
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- .. find and download the list of all GO Consortium Reference Genome Project mouse genes?
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Biochemical Pathways
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How do I ...
- .. see a list of all pathways in MouseCyc?
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- .. search MouseCyc for a specific compound?
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- .. display my mouse gene expression data in the context of mouse pathways?
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- .. compare mouse pathways to human pathways?
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Mammalian Orthology
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How do I ...
- .. find the mouse ortholog of a human gene?
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- .. download all mouse and human orthologs?
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Analysis Tools