Frequently Asked Questions
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General Questions
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How do I ...
- .. find an answer for a question not listed here?
User Support
- .. contribute my data to MGI?
FAQ
- .. join or unsubscribe from MGI List or MGI Technical List?
FAQ
- .. cite MGI?
FAQ
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Genes, Genome Features & Maps
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How do I ...
- .. search for genes, QTL, or other features in a specific genome interval?
FAQ
- .. search for a gene using an Entrez, Ensembl, VEGA, or other accession ID?
FAQ
- .. search for genes sharing a specific protein domain?
FAQ
- .. search for all gene trap cell lines associated with a gene or marker?
FAQ
- .. retrieve Entrez, Ensembl, VEGA, or other IDs for a list of genes?
FAQ
- .. create a genome map from a genomic interval?
FAQ
- .. see different gene models along with the MGI-curated representative model?
FAQ
- .. find or obtain approved nomenclature for a gene, allele or strain?
FAQ
- .. find genomic or cDNA clones?
FAQ
- .. find primer sequence for a gene?
FAQ
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Phenotypes, Alleles & Disease Models
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How do I ...
- .. find mutations in a specific gene?
FAQ
- .. find mouse models for a human disease or condition?
FAQ
- .. find mutations that cause a specific combination of phenotypes?
FAQ
- .. find all of one kind of allele (e.g. cre transgenes, LoxP/Frt-flanked alleles, etc.)?
FAQ
- .. find candidate genes for a given phenotype and a specific genome location?
FAQ
- .. download all phenotype annotations in MGI?
FAQ
- .. find available strains carrying a mutation in a specific gene?
FAQ
- .. find an ES cell line?
FAQ
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Gene Expression
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How do I ...
- .. find expression data for a specific gene and tissue?
FAQ
- .. find expression data for a tissue during development?
FAQ
- .. find genes expressed in one tissue but not another?
FAQ
- .. find references that report expression data for a gene at a specific age?
FAQ
- .. find expression data in mouse mutants?
FAQ
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GO Functional Annotations
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How do I ...
- .. download all mouse GO annotations?
FAQ
- .. find all GO annotations for a specific mouse gene?
FAQ
- .. find all mouse genes with shared annotation to a GO term?
FAQ
- .. find shared function for a list of specific mouse genes?
FAQ
- .. view annotations for mouse/human/rat ortholog sets?
FAQ
- .. obtain FASTA sequence files for mouse genes with GO annotations in common?
FAQ
- .. find and download the list of all GO Consortium Reference Genome Project mouse genes?
FAQ
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Biochemical Pathways
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How do I ...
- .. see a list of all pathways in MouseCyc?
FAQ
- .. search MouseCyc for a specific compound?
FAQ
- .. display my mouse gene expression data in the context of mouse pathways?
FAQ
- .. compare mouse pathways to human pathways?
FAQ
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Strains, SNPs & Polymorphisms
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How do I ...
- .. find all known coding SNPs in a specific genomic location for one or more strains?
FAQ
- .. find strains with RFLP/PCR polymorphisms in a particular gene?
FAQ
- .. find characteristics of a specific strain in M. Festing's Inbred Strains of Mice and Rats?
FAQ
- .. find genomic sequence for a specific mouse strain?
FAQ
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Mammalian Orthology
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How do I ...
- .. view the ortholog set for a mouse gene?
FAQ
- .. view a comparative map of mouse and human chromosomes?
FAQ
- .. search or browse PIRSF protein superfamilies mapped to mouse, human, and rat genes?
FAQ
- .. find the mouse ortholog of a human gene?
FAQ
- .. download all mouse and human orthologs?
FAQ
- .. view a mouse linkage map with human orthologs?
FAQ
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