How do I create a genome map from a genomic interval?
The Mouse Genome Browser graphically displays genes, alleles, phenotypes, QTL and SNPs on mouse chromosomes.
Accessing the Mouse Genome Browser

On most MGI pages, you can access the Mouse Genome Browser from the Search menu as shown in the image at right.

For this tutorial, open the Mouse Genome Browser in a new window. Scroll down this page for further instructions.

Search Menu Genome Browser Screen Shot

Example 1. Displaying targeted alleles, VEGA transcripts, QTL and a variety of phenotypes on Chromosome 7 between 101 and 103 Mbp
  1. Change the text in the text box to chr7:101000000..103000000 to view chromosome 7 from 101Mbp to 103Mbp.

  2. Press Enter or click Go.
Genome Browser

  1. Check the boxes next to the following:
    Targeted Alleles
    Behavior Phenotypes
    Digestive Phenotypes
    Growth Phenotypes
    Homeostasis Phenotypes
    Immune Phenotypes
    Havana/VEGA Genes

  2. Scroll down to view all tracks.

  3. Reorder the tracks by dragging the terms in browser to desired order.
Genome Browser Tracks