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Tbx1 Gene Detail
Summary
  • Symbol
    Tbx1
  • Name
    T-box 1
  • Feature Type
    protein coding gene
  • IDs
    MGI:98493
    NCBI Gene: 21380
  • Gene Overview
    MyGene.info: TBX1
  • Alliance
Location & Maps
more
  • Sequence Map
    Chr16:18581713-18586969 bp, - strand
  • From Ensembl annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      5257 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 16, 11.51 cM
  • Mapping Data
    14 experiments
Homology
more
  • Human Ortholog
    TBX1, T-box 1
  • Vertebrate Orthologs
    8
  • Human Ortholog
    TBX1, T-box 1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    CAFS, CATCH22, CTHM, DGCR, DGS, DORV, TBX1C, TGA, VCF, VCFS
  • Links
    NCBI Gene ID: 6899
    neXtProt AC: NX_O43435
    UniProt: O43435

  • Chr Location
    22q11.21; chr22:19756703-19783593 (+)  GRCh38.p7

  • HomoloGene
    Vertebrate Homology Class 7966
    1 human;1 mouse;1 rat;1 chimpanzee;1 dog;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
  • HCOP
    human homology predictions: TBX1
  • Gene Tree
Human Diseases
more
  • Diseases
    4 with Tbx1 mouse models; 4 with human TBX1 associations

Human Disease Mouse Models
      
IDs
View 21 models
IDs
View 5 models
      
IDs
View 1 model
IDs
View 1 model
      
IDs
IDs
Click on a disease name to see all genes associated with that disease.

  • Mutations/Alleles
    9 with disease annotations
  • References
    15 with disease annotations
Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    202 phenotypes from 20 alleles in 32 genetic backgrounds
    84 phenotypes from multigenic genotypes
    11 images
    149 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Homozygous null mice display neonatal lethality, persistent truncus arteriosis, abnormal aortic arch, abnormal inner, middle, and outer ear morphology, abnormal lymphangiogenesis, and abnormal cranial base morphology. Heterozygous null mice display abnormal fourth aortic arch arteries.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
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Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
  • Comparison Matrix
  • Interactions
    less
    Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000009097 Ensembl Gene Model | MGI Sequence Detail 5257 C57BL/6J ±  kb
    transcript ENSMUST00000009241 Ensembl | MGI Sequence Detail 1777 Not Applicable  
    polypeptide ENSMUSP00000009241 Ensembl | MGI Sequence Detail 488 Not Applicable  
    For the selected sequence
    Polymorphisms
    less
    • SNPs within 2kb
      1 from dbSNP Build 142
    Protein
    Information
    less
    • UniProt
      2 Sequences
    • InterPro Domains
      IPR008967 p53-like transcription factor, DNA-binding
      IPR036960 T-box superfamily
      IPR001699 Transcription factor, T-box
      IPR018186 Transcription factor, T-box, conserved site
    Molecular
    Reagents
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    • All nucleic 72
      Genomic 31
      cDNA 17
      Primer pair 17
      Other 7

      Microarray probesets 2
    Other
    Accession IDs
    less
    MGD-MRK-14730
    References
    more
    • Summaries
      All 288
      Developmental Gene Expression 172
      Diseases 15
      Gene Ontology 53
      Phenotypes 149
    • Earliest
      J:18978 Bollag RJ, et al., An ancient family of embryonically expressed mouse genes sharing a conserved protein motif with the T locus. Nat Genet. 1994 Jul;7(3):383-9
    • Latest
      J:257058 Liu C, et al., Triplications of human chromosome 21 orthologous regions in mice result in expansion of megakaryocyte-erythroid progenitors and reduction of granulocyte-macrophage progenitors. Oncotarget. 2018 Jan 12;9(4):4773-4786

    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
    Citing These Resources
    Funding Information
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    last database update
    05/15/2018
    MGI 6.12
    The Jackson Laboratory