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Shh
Gene Detail
Symbol

Name
ID
Shh
sonic hedgehog
MGI:98297
Synonyms
Hhg1, Hx, Hxl3, M100081
Feature Type
protein coding gene
Genetic Map
Chromosome 5
14.39 cM
Detailed Genetic Map ± 1 cM


Mapping data(24)
Sequence Map
Chr5:28456815-28467101 bp, - strand
From VEGA annotation of GRCm38

  10287 bp   ±  kb flank

VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer


Mouse Genome Browser
Vertebrate
homology
HomoloGene:30961  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 western clawed frog; 2 zebrafish

Protein SuperFamily: hedgehog protein
Gene Tree: Shh

Human
homologs
Human Homolog SHH, sonic hedgehog
NCBI Gene ID 6469
neXtProt AC  NX_Q15465
Human Synonyms  HHG1, HLP3, HPE3, MCOPCB5, SMMCI, TPT, TPTPS
Human Chr (Location)  7q36; chr7:155802864-155812273 (-)  GRCh38
Disease Associations  (4) Diseases Associated with Human SHH
Mutations,
alleles, and
phenotypes
All mutations/alleles(33) : Chemically induced (ENU)(8) Radiation induced(4) Spontaneous(1) Targeted(20)
Genomic Mutations involving Shh (3)
 
Heterozygotes exhibit shortening of all digits, holes between the frontal bones, dyssymphyses between cervical vertebrae and bony plates over many ribs. Homozygotes usually die before E12, are short-limbed dwarfs and lack forefeet, hindfeet, eyes, ears, external genetalia and a mouth.
 
Human Diseases Modeled Using Mouse Shh (2)    Alleles Annotated to Human Diseases(4)    Phenotype Images(2)
Interactions
Shh interacts with 196 markers (Mir7-1, Mir9-1, Mir9-2, ...)
Gene Ontology
(GO)
classifications
All GO classifications: (312 annotations)
Process anatomical structure development, anatomical structure formation involved in morphogenesis, ...
Component axon, cell surface, ...
Function calcium ion binding, glycoprotein binding, ...
External Resources: FuncBase
Expression
Literature Summary: (1293 records)
Data Summary: Results (2575)    Tissues (696)    Images (1185)    Tissue x Stage Matrix (view)
Assay TypeResults
Immunohistochemistry 94
RNA in situ 2310
In situ reporter (knock in) 2
Northern blot 36
Western blot 16
RT-PCR 117
cDNA source data(36)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas
Molecular
reagents
All nucleic(171) Genomic(1) cDNA(60) Primer pair(20) Other(90)
Microarray probesets(4)
Other database
links
VEGA Gene ModelOTTMUSG00000021299 (Evidence)
Ensembl Gene ModelENSMUSG00000002633 (Evidence)
Entrez Gene20423 (Evidence)
PDB1VHH, 2WFX, 3D1M, 3N1R, 4C4M, 4C4N, 2WG4
Consensus CDS ProjectCCDS19146.1
International Mouse Knockout Project StatusShh
Sequences
Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000021299 VEGA Gene Model | MGI Sequence Detail 10287 C57BL/6J ±  kb
transcript OTTMUST00000050499 VEGA | MGI Sequence Detail 2692 Not Applicable 
polypeptide OTTMUSP00000023583 VEGA | MGI Sequence Detail 437 Not Applicable 

For the selected sequences
All sequences(24) RefSeq(6) UniProt(5)
Polymorphisms
RFLP(2) : SNPs within 2kb(35 from dbSNP Build 137)
Protein-related
information
ResourceIDDescription
InterPro IPR000320 Hedgehog, N-terminal signaling domain
InterPro IPR001657 Hedgehog protein
InterPro IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain
InterPro IPR001767 Hint domain
InterPro IPR003586 Hint domain C-terminal
InterPro IPR003587 Hint domain N-terminal
InterPro IPR006141 Intein splice site
Protein Ontology PR:000014841 sonic hedgehog protein
References
(Earliest) J:13476 Dickie MM, Hemimelic extra toes, Hx. Mouse News Lett. 1968;38:24
(Latest) J:214731 Pulina M, et al., Shape and position of the node and notochord along the bilateral plane of symmetry are regulated by cell-extracellular matrix interactions. Biol Open. 2014;3(7):583-90
All references(1626)
Disease annotation references (3)
Other
accession IDs
MGD-MRK-11020, MGD-MRK-14403, MGD-MRK-19573, MGD-MRK-8906, MGI:3051411, MGI:94931, MGI:96290

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
12/09/2014
MGI 5.20
The Jackson Laboratory