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Sel1l3 Gene Detail
Summary
  • Symbol
    Sel1l3
  • Name
    sel-1 suppressor of lin-12-like 3 (C. elegans)
  • Synonyms
    2310045A20Rik, mKIAA0746
  • Feature Type
    protein coding gene
  • IDs
    MGI:1916941
    NCBI Gene: 231238
  • Alliance
    gene page
  • Transcription Start Sites
    5 TSS
Location &
Maps
more
  • Sequence Map
    Chr5:53264425-53370794 bp, - strand
    From NCBI annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 5, 28.96 cM
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    330 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1916941
 protein coding gene Chr5:53264425-53371269 (-)
129S1/SvImJ MGP_129S1SvImJ_G0029552
 protein coding gene Chr5:52124250-52239755 (-)
A/J MGP_AJ_G0029520
 protein coding gene Chr5:50296994-50406510 (-)
AKR/J MGP_AKRJ_G0029468
 protein coding gene Chr5:52024291-52134680 (-)
BALB/cJ MGP_BALBcJ_G0029529
 protein coding gene Chr5:50783586-50896135 (-)
C3H/HeJ MGP_C3HHeJ_G0029252
 protein coding gene Chr5:52162721-52277278 (-)
C57BL/6NJ MGP_C57BL6NJ_G0029983
 protein coding gene Chr5:54290203-54397733 (-)
CAROLI/EiJ MGP_CAROLIEiJ_G0027223
 protein coding gene Chr5:47054272-47163392 (-)
CAST/EiJ MGP_CASTEiJ_G0028660
 protein coding gene Chr5:51174356-51288230 (-)
CBA/J MGP_CBAJ_G0029221
 protein coding gene Chr5:55948986-56067852 (-)
DBA/2J MGP_DBA2J_G0029367
 protein coding gene Chr5:50359245-50471602 (-)
FVB/NJ MGP_FVBNJ_G0029327
 protein coding gene Chr5:49697371-49805166 (-)
LP/J MGP_LPJ_G0029452
 protein coding gene Chr5:52598436-52709903 (-)
NOD/ShiLtJ MGP_NODShiLtJ_G0029355
 protein coding gene Chr5:57034532-57152747 (-)
NZO/HlLtJ MGP_NZOHlLtJ_G0030016
 protein coding gene Chr5:51499145-51616606 (-)
PWK/PhJ MGP_PWKPhJ_G0028384
 protein coding gene Chr5:49419097-49530480 (-)
SPRET/EiJ MGP_SPRETEiJ_G0028218
 protein coding gene Chr5:50940975-51055641 (-)
WSB/EiJ MGP_WSBEiJ_G0028741
 protein coding gene Chr5:51561508-51672580 (-)



Homology
more
  • Human Ortholog
    SEL1L3, SEL1L family member 3
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    SEL1L3, SEL1L family member 3
  • Synonyms
    Sel-1L3
  • Links
    NCBI Gene ID: 23231
    neXtProt AC: NX_Q68CR1
    UniProt: Q68CR1

  • Chr Location
    4p15.2; chr4:25713964-25863760 (-)  GRCh38
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 1 genetic background
    21 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    1
  • GO References
    1
Molecular Function

No experimental evidence to support Molecular Function annotation, following literature review. See J:73796.
Biological Process

No experimental evidence to support Biological Process annotation, following literature review. See J:73796.
Cellular Component

Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    889
  • Tissues
    33
  • cDNA Data
    43
  • Literature Summary
    6
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic 231238 NCBI Gene Model | MGI Sequence Detail 106370 C57BL/6J ±  kb
    transcript NM_172710 RefSeq | MGI Sequence Detail 4532 C57BL/6  
    polypeptide Q80TS8 UniProt | EBI | MGI Sequence Detail 1137 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 44
      cDNA 43
      Primer pair 1

      Microarray probesets 4
    Other
    Accession IDs
    less
    MGI:2140876
    References
    more
    • Summaries
      All 50
      Developmental Gene Expression 6
      Gene Ontology 1
      Phenotypes 21
    • Earliest
      J:5021 Batchelor AL, et al., A comparison of the mutagenic effectiveness of chronic neutron- and gamma-irradiation of mouse spermatogonia. Mutat Res. 1966 Jun;3(3):218-29
    • Latest
      J:292644 Whiley PAF, et al., Activin A Determines Steroid Levels and Composition in the Fetal Testis. Endocrinology. 2020 Jul 1;161(7)
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    04/16/2024
    MGI 6.23     		The Jackson Laboratory