Ppfia1
Gene Detail

Symbol Name ID

Ppfia1 protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1 MGI:1924750

Synonyms

C030014K08Rik, liprin, Liprin-alpha1, Liprin-alpha1a, Liprin-alpha1b

Feature Type

protein coding gene

Genetic Map

Chromosome 7

88.85 cM
Detailed Genetic Map ± 1 cM


Mapping data(2)

Sequence Map

Chr7:144476755-144553729 bp, - strand From NCBI annotation of GRCm38   76975 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:20802  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Ppfia1

Human homologs

Human Homolog		PPFIA1, protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 1
NCBI Gene ID		8500
neXtProt AC		NX_Q13136
Human Synonyms		LIP1, LIP.1, LIPRIN
Human Chr (Location)		11q13.3; chr11:70116806-70230607 (+)  GRCh37.p10

Alleles and phenotypes

All alleles(5) : Gene trapped(5)

Gene Ontology (GO) classifications

All GO classifications: (4 annotations)

Process	biological_process
Component	cellular_component
Function	protein binding

External Resources: FuncBase

Expression

Literature Summary: (3 records)
Data Summary: Results (29)    Tissues (29)    Images (8)
Theiler Stages: 19, 23, 28

Assay Type	Results
RNA in situ	29

cDNA source data(170)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(170) cDNA(170)
Microarray probesets(5)

Other database links

Ensembl Gene Model	ENSMUSG00000037519 (Evidence)
Entrez Gene	233977 (Evidence)
UniGene	272809
DFCI	TC1600458, TC1602053, TC1621032
DoTS	DT.101722392, DT.40177260, DT.94213688, DT.94213692
NIA Mouse Gene Index	U029525, U365840, U375679
Consensus CDS Project	CCDS52464.1
International Mouse Knockout Project Status	Ppfia1

Sequences

Length	Strain/Species
genomic	233977	NCBI Gene Model | MGI Sequence Detail	76975	C57BL/6J
transcript	NM_001195086	RefSeq | MGI Sequence Detail	5259	C57BL/6
polypeptide	NP_001182015	RefSeq | MGI Sequence Detail	1266	C57BL/6

All sequences(40) RefSeq(4) UniProt(4)

Polymorphisms

SNPs(278 from dbSNP Build 128)

Protein-related information

Resource	ID	Description
InterPro	IPR001660	Sterile alpha motif domain
InterPro	IPR013761	Sterile alpha motif/pointed domain
InterPro	IPR021129	Sterile alpha motif, type 1
InterPro	IPR011510	Sterile alpha motif, type 2
Protein Ontology	PR:000013068	liprin-alpha-1

References

(Earliest) J:60984 Ko MS, et al., Large-scale cDNA analysis reveals phased gene expression patterns during preimplantation mouse development. Development. 2000 Apr;127(8):1737-49
(Latest) J:153498 Diez-Roux G, et al., A high-resolution anatomical atlas of the transcriptome in the mouse embryo. PLoS Biol. 2011;9(1):e1000582
All references(32)

Other accession IDs

MGI:2142372