Mapping Data

Experiment

• Experiment
  TEXT
• Chromosome
  1
• Reference
  J:52853 Underhill DA, et al., Physical delineation of a 700-kb region overlapping the Looptail mutation on mouse chromosome 1. Genomics. 1999 Jan 15;55(2):185-93
• ID
  MGI:1347620

Genes

Gene	Assay Type
Usf1	overlapping clones, PCR amplified length variant
Fcer1g	overlapping clones, PCR amplified length variant
Apoa2	overlapping clones
D1Dau3	overlapping clones
D1Dau4	overlapping clones
D1Wsu1e	overlapping clones
D1Dau5	overlapping clones
D1Dau6	overlapping clones
D1Mit113	overlapping clones
D1Dau8	overlapping clones
D1Dau9	overlapping clones
D1Dau10	overlapping clones
D1Dau11	overlapping clones
D1Dau12	overlapping clones
Nhlh1	overlapping clones, PCR amplified length variant
Ncstn	overlapping clones
D1Dau14	overlapping clones
D1Dau15	overlapping clones
D1Dau16	overlapping clones
D1Dau17	overlapping clones
Dcaf8	overlapping clones
Pea15a	overlapping clones, direct sequencing
D1Dau18	overlapping clones
D1Dau19	overlapping clones
D1Dau20	overlapping clones
D1Dau1	overlapping clones
D1Dau21	overlapping clones
Atp1a2	overlapping clones, PCR amplified length variant
D1Dau22	overlapping clones
D1Dau23	overlapping clones
D1Dau2	overlapping clones
D1Dau24	overlapping clones
D1Dau25	overlapping clones
D1Dau26	overlapping clones
D1Dau27	overlapping clones
D1Dau28	overlapping clones
D1Dau29	overlapping clones
D1Dau30	overlapping clones
D1Dau31	overlapping clones
Kcnj9	overlapping clones, direct sequencing
D1Dau32	overlapping clones
D1Dau33	overlapping clones
Fcer1a	overlapping clones, PCR amplified length variant
D1Dau34	overlapping clones
D1Mit149	overlapping clones
Spta1	overlapping clones
D1Dau7e	overlapping clones

Notes

• Experiment
  The authors used FISH analysis, STS-content mapping and physical mapping of BACs and YACs to generate a map of the 700kb region comprising he Lp gene. The order of markers on mouse Chromosome 1 is: D1Dau3 - D1Dau4 - D1Wsu1e - D1Dau5 - D1Dau6 - D1Mit113 -D1Dau7e - D1Dau8 - D1Dau9 - D1Dau10 - D1Dau11 - D1Dau12 - Nhlh1 - D1Dau13e - D1Dau14 - D1Dau15 - D1Dau16 - D1Dau17 - D1Dau35e - Pea15 - D1Dau18 - D1Dau19 - D1Dau20 - D1Dau1 - D1Dau21 - Atp1a2 - D1Dau22 - D1Dau23 - D1Dau2 - D1Dau24 - D1Dau25 - D1Dau26 - D1Dau27 - D1Dau28 - D1Dau29 - D1Dau30 - D1Dau31 - Kcnj9 - D1Dau32 - D1Dau33 - Fcer1a - D1Dau34 - D1Dau149 - Spna1. The combination of physical mapping and contig assembly also allowed the authors to make an estimate of the distance between the marker as: Usf1, Fcer1g, Apoa2 - (<150kb) - D1Wsu1e - (<300kb) - D1Mit113 - (<150kb) - Nhlh1 - (<250kb) - Atp1a2 - (280kb) - Fcer1a, D1Mit149, Spna1.