Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SATB2
  • Mouse genes Satb2
  • Rat genes Satb2
  • Zfish genes satb2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Satb2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Satb2	IDA		Mouse	PMID:16751105
Molecular Function	GO:0003682	chromatin binding	Satb2	IDA		Mouse	PMID:23144223
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	SATB2	IDA		Human	PMID:22825848
Molecular Function	GO:0042826	histone deacetylase binding	Satb2	IPI	UniProtKB:B2GV01	Rat	PMID:18255031|RGD:39458013
Molecular Function	GO:0042826	histone deacetylase binding	Satb2	IPI	UniProtKB:Q4QQW4	Rat	PMID:18255031|RGD:39458013
Molecular Function	GO:0005515	protein binding	SATB2	IPI	UniProtKB:Q9H3D4-2	Human	PMID:20829881
Molecular Function	GO:0005515	protein binding	SATB2	IPI	UniProtKB:Q8TBN0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SATB2	IPI	UniProtKB:Q9H1A7	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Satb2	IPI	UniProtKB:O09106|UniProtKB:P53564|UniProtKB:Q9R190	Mouse	MGI:MGI:6280169|PMID:30726206
Molecular Function	GO:0005515	protein binding	Satb2	IPI	UniProtKB:O09106|UniProtKB:P12755|UniProtKB:Q60698|UniProtKB:Q9R190	Mouse	MGI:MGI:5314844|PMID:22334647
Molecular Function	GO:0005515	protein binding	Satb2	IPI	PR:Q06507	Mouse	PMID:16751105
Molecular Function	GO:0005515	protein binding	Satb2	IPI	PR:Q08775	Mouse	PMID:16751105
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Satb2	IDA		Mouse	PMID:18255031
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Satb2	IDA		Mouse	PMID:15733084
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	SATB2	IDA		Human	PMID:22825848
Molecular Function	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	Satb2	IDA		Mouse	MGI:MGI:3692344|PMID:16751105
Molecular Function	GO:0043565	sequence-specific DNA binding	Satb2	IGI	MGI:MGI:99829	Mouse	PMID:16751105
Molecular Function	GO:0043565	sequence-specific DNA binding	Satb2	IGI	MGI:MGI:88096	Mouse	PMID:16751105
Cellular Component	GO:0000118	histone deacetylase complex	Satb2	IDA		Mouse	PMID:18255031
Cellular Component	GO:0005654	nucleoplasm	SATB2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Satb2	IDA		Mouse	PMID:15733084
Cellular Component	GO:0005667	transcription regulator complex	Satb2	IDA		Mouse	PMID:16751105
Biological Process	GO:0051216	cartilage development	Satb2	IMP	MGI:MGI:3692768	Mouse	PMID:16751105
Biological Process	GO:0071310	cellular response to organic substance	Satb2	IDA		Mouse	PMID:18794345
Biological Process	GO:0006338	chromatin remodeling	Satb2	IDA		Mouse	PMID:18255031
Biological Process	GO:0009880	embryonic pattern specification	Satb2	IMP	MGI:MGI:3692768	Mouse	PMID:16751105
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Satb2	IMP	MGI:MGI:3695425	Mouse	PMID:16960803
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Satb2	IMP	MGI:MGI:3692768	Mouse	PMID:16751105
Biological Process	GO:0055113	epiboly involved in gastrulation with mouth forming second	satb2	IMP	ZFIN:ZDB-MRPHLNO-101118-3	Zfish	PMID:20814748
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Satb2	IMP	MGI:MGI:3692768	Mouse	PMID:16751105
Biological Process	GO:0001764	neuron migration	Satb2	IMP	MGI:MGI:3695425	Mouse	PMID:18255031
Biological Process	GO:0002076	osteoblast development	Satb2	IMP	MGI:MGI:3692768	Mouse	PMID:16751105
Biological Process	GO:0002076	osteoblast development	Satb2	IGI	MGI:MGI:96174	Mouse	PMID:16751105
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	SATB2	IDA		Human	PMID:22825848
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Satb2	IDA		Mouse	PMID:16751105
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Satb2	IGI	MGI:MGI:99829	Mouse	PMID:16751105
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Satb2	IGI	MGI:MGI:88096	Mouse	PMID:16751105
Biological Process	GO:0010468	regulation of gene expression	Satb2	IMP	MGI:MGI:3695425	Mouse	PMID:18255031
Biological Process	GO:0060021	roof of mouth development	Satb2	IMP	MGI:MGI:3695425	Mouse	PMID:16960803
Biological Process	GO:0060021	roof of mouth development	Satb2	IMP	MGI:MGI:3692768	Mouse	PMID:16751105

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern