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Gpatch4 Gene Detail
Summary
  • Symbol
    Gpatch4
  • Name
    G patch domain containing 4
  • Synonyms
    2610029K21Rik, Gpatc4
  • Feature Type
    protein coding gene
  • IDs
    MGI:1913864
    NCBI Gene: 66614
  • Alliance
    genome feature page
  • Transcription Start Sites
    4 TSS
Location &
Maps
more
  • Sequence Map
    Chr3:87950415-87963300 bp, + strand
    From Ensembl annotation of GRCm39
  • View this region in JBrowse
  • Genome Browsers
    Ensembl | UCSC | NCBI
  • Genetic Map
    Chromosome 3, 38.78 cM, cytoband F1
  • Mapping Data
    2 experiments
Strain
Comparison
more
  • SNPs within 2kb
    374 from dbSNP Build 142
  • Strain Annotations
    19
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_1913864
 protein coding gene Chr3:87950413-87963301 (+)
129S1/SvImJ ENSMUSG00200038097
 protein coding gene Chr3:84805264-84818146 (+)
A/J ENSMUSG00195050056
 protein coding gene Chr3:84829035-84842181 (+)
AKR/J ENSMUSG00220047901
 protein coding gene Chr3:84774998-84787882 (+)
BALB/cJ ENSMUSG00180044954
 protein coding gene Chr3:84944621-84957501 (+)
C3H/HeJ ENSMUSG00175046102
 protein coding gene Chr3:84756754-84769901 (+)
C57BL/6NJ ENSMUSG00215049234
 protein coding gene Chr3:85192977-85205862 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0025152
 protein coding gene Chr3:80819567-80831303 (+)
CAST/EiJ ENSTCUG00005041180
 protein coding gene Chr3:84283934-84296244 (+)
CBA/J ENSMUSG00210041794
 protein coding gene Chr3:84899758-84912901 (+)
DBA/2J ENSMUSG00185049660
 protein coding gene Chr3:85033294-85046178 (+)
FVB/NJ ENSMUSG00205040684
 protein coding gene Chr3:83823991-83837144 (+)
JF1/MsJ ENSUMUG00000008389
 protein coding gene Chr3:84571010-84584237 (+)
LP/J ENSMUSG00230033157
 protein coding gene Chr3:87026673-87039550 (+)
NOD/ShiLtJ ENSMUSG00190030606
 protein coding gene Chr3:85276208-85289360 (+)
NZO/HlLtJ ENSMUSG00225006196
 protein coding gene Chr3:89781983-89794855 (+)
PWK/PhJ ENSLUMG00010047373
 protein coding gene Chr3:84663821-84676681 (+)
SPRET/EiJ ENSMSPG00010049733
 protein coding gene Chr3:85501588-85514231 (+)
WSB/EiJ ENSIUOG00005043745
 protein coding gene Chr3:85276642-85289514 (+)



Homology
more
  • Human Ortholog
    GPATCH4, G-patch domain containing 4 (gene/pseudogene)
  • Vertebrate Orthologs
    3
Vertebrate Orthology Source
Alliance of Genome Resources
  • Human Ortholog
    GPATCH4, G-patch domain containing 4 (gene/pseudogene)
  • Synonyms
    GPATC4
  • Links
    NCBI Gene ID: 54865
    UniProt: Q5T3I0

  • Chr Location
    1q22-q23.1; chr1:156594301-156601496 (-)  GRCh38
Human Diseases
less
  • References
    1 with disease annotations
Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    13 phenotypes from 1 allele in 1 genetic background
    15 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
integument
immune system
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
neoplasm
vision/eye

Click cells to view annotations.
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
    3
  • GO References
    3
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell differentiation
cell population proliferation
cellular component organization
DNA-templated transcription
establishment of localization
homeostatic process
immune system process
lipid metabolic process
programmed cell death
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
membraneless organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
protein-containing complex
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
    619
  • Tissues
    22
  • cDNA Data
    34
  • Literature Summary
    1
  • Comparison Matrix
    Gene Expression + Phenotype
    • Sequences &
    Gene Models
    less
    Representative SequencesLengthStrain/SpeciesFlank
    genomic ENSMUSG00000028069 Ensembl Gene Model | MGI Sequence Detail 12886 C57BL/6J ±  kb
    transcript ENSMUST00000029707 Ensembl | MGI Sequence Detail 1630 Not Applicable  
    polypeptide ENSMUSP00000029707 Ensembl | MGI Sequence Detail 415 Not Applicable  
    For the selected sequence
    Protein
    Information
    less
    Molecular
    Reagents
    less
    • All nucleic 36
      cDNA 35
      Primer pair 1

      Microarray probesets 5
    References
    more
    • Summaries
      All 42
      Developmental Gene Expression 1
      Diseases 1
      Gene Ontology 3
      Phenotypes 15
    • Earliest
      J:65060 Kawai J, et al., Functional annotation of a full-length mouse cDNA collection. Nature. 2001 Feb 8;409(6821):685-90
    • Latest
      J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426
    Contributing Projects:
    Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
    Citing These Resources
    Funding Information
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    Send questions and comments to User Support.     		last database update
    09/08/2026
    MGI 6.24     		The Jackson Laboratory