Abca1
Gene Detail

Symbol Name ID

Abca1 ATP-binding cassette, sub-family A (ABC1), member 1 MGI:99607

Synonyms

ABC1

Feature Type

protein coding gene

Genetic Map

Chromosome 4

28.57 cM, cytoband A5-B3
Detailed Genetic Map ± 1 cM


Mapping data(8)

Sequence Map

Chr4:53030787-53159895 bp, - strand From VEGA annotation of GRCm38   129109 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:21130  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 cattle; 1 dog; 1 chicken; 2 zebrafish

Gene Tree: Abca1

Human homologs

Human Homolog		ABCA1, ATP-binding cassette, sub-family A (ABC1), member 1
NCBI Gene ID		19
neXtProt AC		NX_O95477
Human Synonyms		ABC1, ABC-1, CERP, HDLDT1, TGD
Human Chr (Location)		9q31.1; chr9:107543283-107690527 (-)  GRCh37.p13
Disease Associations		(4) Diseases Associated with Human ABCA1

Alleles and phenotypes

All alleles(11) : Targeted(9) Gene trapped(1) Chemically induced(1)
 

Many homozygous null mutants die perinatally with placental defects. Survivors show altered steroidogenesis, defective lipid export in Golgi, low serum cholesterol, lipid accumulation in macrophages and lung, reduced fertility and kidney and heart defects.

 
Human Diseases Modeled Using Mouse Abca1 (2)    Alleles Annotated to Human Diseases(6)    Phenotype Images(1)

Gene Ontology (GO) classifications

All GO classifications: (75 annotations)

Process	apolipoprotein A-I-mediated signaling pathway, cellular response to lipopolysaccharide, ...
Component	cell surface, endocytic vesicle, ...
Function	anion transmembrane transporter activity, apolipoprotein A-I binding, ...

External Resources: FuncBase

Expression

Literature Summary: (13 records)

Data Summary: Results (191)    Tissues (104)    Images (28)
Theiler Stages: 21, 22, 23

Assay Type	Results
RNA in situ	191

cDNA source data(101)
External Resources: Allen Institute   GEO   ArrayExpress

Molecular reagents

All nucleic(102) cDNA(101) Other(1)
Microarray probesets(6)

Other database links

VEGA Gene Model	OTTMUSG00000007157 (Evidence)
Ensembl Gene Model	ENSMUSG00000015243 (Evidence)
Entrez Gene	11303 (Evidence)
UniGene	277376
DFCI	TC1582475, TC1597897, TC1696417, TC1764253
DoTS	DT.491162, DT.91590402
NIA Mouse Gene Index	U025071
Consensus CDS Project	CCDS18187.1
International Mouse Knockout Project Status	Abca1

Sequences

Length	Strain/Species
genomic	OTTMUSG00000007157	VEGA Gene Model | MGI Sequence Detail	129109	C57BL/6J
transcript	OTTMUST00000016509	VEGA | MGI Sequence Detail	10262	Not Applicable
polypeptide	OTTMUSP00000007567	VEGA | MGI Sequence Detail	2261	Not Applicable

All sequences(47) RefSeq(8) UniProt(2)

Polymorphisms

RFLP(1) : SNPs within 2kb(1035 from dbSNP Build 137)

Protein-related information

Resource	ID	Description
InterPro	IPR003593	AAA+ ATPase domain
InterPro	IPR026082	ABC transporter A, ABCA
InterPro	IPR017871	ABC transporter, conserved site
InterPro	IPR003439	ABC transporter-like
InterPro	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Protein Ontology	PR:000003537	ATP-binding cassette sub-family A member 1

References

(Earliest) J:24443 Higgins CF, ABC transporters: from microorganisms to man. Annu Rev Cell Biol. 1992;8:67-113
(Latest) J:204909 Iqbal J, et al., Lipid absorption defects in intestine-specific microsomal triglyceride transfer protein and ATP-binding cassette transporter A1-deficient mice. J Biol Chem. 2013 Oct 18;288(42):30432-44
All references(187)

Other accession IDs

MGD-MRK-16392