Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TRIM13
  • Mouse genes Trim13
  • Rat genes Trim13
  • Zfish genes trim13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Trim13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TRIM13	IPI	UniProtKB:P55072	Human	PMID:17314412
Molecular Function	GO:0005515	protein binding	TRIM13	IPI	UniProtKB:P31749	Human	PMID:21333377
Molecular Function	GO:0005515	protein binding	TRIM13	IPI	UniProtKB:Q00987	Human	PMID:21333377
Molecular Function	GO:0005515	protein binding	TRIM13	IPI	UniProtKB:Q13501	Human	PMID:22178386
Molecular Function	GO:0005515	protein binding	TRIM13	IPI	UniProtKB:Q53SE7	Human	PMID:25416956
Molecular Function	GO:0003713	transcription coactivator activity	TRIM13	IDA		Human	PMID:23077300
Molecular Function	GO:0004842	ubiquitin-protein transferase activity	TRIM13	IDA		Human	PMID:17314412
Cellular Component	GO:0005737	cytoplasm	Trim13	IDA		Mouse	PMID:11331580
Cellular Component	GO:0005789	endoplasmic reticulum membrane	TRIM13	IDA		Human	PMID:17314412
Cellular Component	GO:0097038	perinuclear endoplasmic reticulum	TRIM13	IDA		Human	PMID:17314412
Cellular Component	GO:0097038	perinuclear endoplasmic reticulum	TRIM13	IDA		Human	PMID:22178386
Biological Process	GO:0045087	innate immune response	TRIM13	IDA		Human	PMID:18248090
Biological Process	GO:0032897	negative regulation of viral transcription	TRIM13	IDA		Human	PMID:18248090
Biological Process	GO:0010942	positive regulation of cell death	TRIM13	IDA		Human	PMID:21333377
Biological Process	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	TRIM13	HMP		Human	PMID:12761501
Biological Process	GO:0043123	positive regulation of I-kappaB kinase/NF-kappaB signaling	TRIM13	IDA		Human	PMID:23077300
Biological Process	GO:0016239	positive regulation of macroautophagy	TRIM13	IDA		Human	PMID:22178386
Biological Process	GO:0051092	positive regulation of NF-kappaB transcription factor activity	TRIM13	IMP		Human	PMID:23077300
Biological Process	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	TRIM13	IDA		Human	PMID:17314412
Biological Process	GO:0051865	protein autoubiquitination	TRIM13	IDA		Human	PMID:17314412
Biological Process	GO:0010332	response to gamma radiation	TRIM13	IEP		Human	PMID:21333377
Biological Process	GO:0044790	suppression of viral release by host	TRIM13	IDA		Human	PMID:18248090
Biological Process	GO:0030433	ubiquitin-dependent ERAD pathway	TRIM13	IDA		Human	PMID:17314412

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern