Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SDC1
  • Mouse genes Sdc1
  • Rat genes Sdc1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sdc1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0038024	cargo receptor activity	Sdc1	IMP		Mouse	PMID:24788042
Molecular Function	GO:0042802	identical protein binding	SDC1	IPI	UniProtKB:P18827	Human	PMID:18093920
Molecular Function	GO:0005515	protein binding	SDC1	IPI	UniProtKB:Q9Y251	Human	PMID:15292202
Molecular Function	GO:0005515	protein binding	SDC1	IPI	UniProtKB:Q9GZZ8	Human	PMID:16982797
Molecular Function	GO:0005515	protein binding	SDC1	IPI	UniProtKB:P34741	Human	PMID:18093920
Molecular Function	GO:0005515	protein binding	SDC1	IPI	UniProtKB:Q13009	Human	PMID:23395182
Molecular Function	GO:0005515	protein binding	SDC1	IPI	UniProtKB:P05067	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	Sdc1	IPI	UniProtKB:Q15113	Mouse	MGI:MGI:5787767|PMID:25286301
Molecular Function	GO:0005515	protein binding	Sdc1	IPI	UniProtKB:P24821	Mouse	PMID:8769660
Molecular Function	GO:0005515	protein binding	Sdc1	IPI	RGD:2611	Rat	PMID:11431373|RGD:1643140
Molecular Function	GO:0005515	protein binding	Sdc1	IPI	UniProtKB:P34900	Rat	PMID:26601939|RGD:13825434
Molecular Function	GO:0005515	protein binding	Sdc1	IPI	UniProtKB:P12025	Rat	PMID:9089390|RGD:14397574
Cellular Component	GO:0009986	cell surface	SDC1	IDA		Human	PMID:25063885
Cellular Component	GO:0009986	cell surface	Sdc1	IDA		Mouse	PMID:15381701
Cellular Component	GO:0009897	external side of plasma membrane	Sdc1	IDA		Mouse	PMID:18762567
Cellular Component	GO:0070062	extracellular exosome	SDC1	HDA		Human	PMID:19056867
Cellular Component	GO:0005886	plasma membrane	Sdc1	IMP		Mouse	PMID:24788042
Cellular Component	GO:0032991	protein-containing complex	Sdc1	IDA		Rat	PMID:11431373|RGD:1643140
Biological Process	GO:0060070	canonical Wnt signaling pathway	Sdc1	IMP	MGI:MGI:1934652	Mouse	PMID:14681683
Biological Process	GO:0006954	inflammatory response	Sdc1	IDA		Rat	PMID:14704229|RGD:1643133
Biological Process	GO:0048627	myoblast development	Sdc1	IDA		Mouse	MGI:MGI:3850624|PMID:9218485
Biological Process	GO:0042476	odontogenesis	Sdc1	IEP		Rat	PMID:11696987|RGD:1643139
Biological Process	GO:1903543	positive regulation of exosomal secretion	SDC1	IMP		Human	PMID:22660413
Biological Process	GO:1903553	positive regulation of extracellular exosome assembly	SDC1	IMP		Human	PMID:22660413
Biological Process	GO:0006898	receptor-mediated endocytosis	Sdc1	IMP		Mouse	PMID:24788042
Biological Process	GO:0051592	response to calcium ion	Sdc1	IEP		Rat	PMID:12135485|RGD:625750
Biological Process	GO:0051591	response to cAMP	Sdc1	IEP		Rat	PMID:12135485|RGD:625750
Biological Process	GO:0051384	response to glucocorticoid	Sdc1	IEP		Rat	PMID:16622173|RGD:1643128
Biological Process	GO:0042542	response to hydrogen peroxide	Sdc1	IEP		Rat	PMID:12859973|RGD:1643134
Biological Process	GO:0010033	response to organic substance	Sdc1	IEP		Rat	PMID:16635253|RGD:1643131
Biological Process	GO:0009636	response to toxic substance	Sdc1	IEP		Rat	PMID:12135485|RGD:625750
Biological Process	GO:0060009	Sertoli cell development	Sdc1	IEP		Rat	PMID:12453641|RGD:1643137
Biological Process	GO:0055002	striated muscle cell development	SDC1	IEP		Human	PMID:9566955
Biological Process	GO:0001657	ureteric bud development	Sdc1	IEP		Rat	PMID:15282150|RGD:1643132
Biological Process	GO:0042060	wound healing	Sdc1	IEP		Rat	PMID:12200974|RGD:1643138

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern