Gfap
Gene Detail

Symbol

Name
ID

Gfap
glial fibrillary acidic protein
MGI:95697

STS

D11Nds5, D11Nds7

Feature Type

protein coding gene

Genetic Map

Chromosome 11
66.48 cM, cytoband D
Detailed Genetic Map ± 1 cM


Mapping data(21)

Sequence Map

Chr11:102887336-102900912 bp, - strand From VEGA annotation of GRCm38   13577 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate
homology

HomoloGene:1554  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 cattle; 1 dog; 1 chicken; 1 zebrafish

Gene Tree: Gfap

Human
homologs

Human Homolog		GFAP, glial fibrillary acidic protein
NCBI Gene ID		2670
neXtProt AC		NX_P14136
Human Chr (Location)		17q21; chr17:44905626-44915552 (-)  GRCh38
Disease Associations		(1) Diseases Associated with Human GFAP

Mutations,
alleles, and
phenotypes

All mutations/alleles(17) : Targeted(14) Transgenic(3)
Genomic Mutations involving Gfap (1)
Incidental mutations (data from APF )
 

Homozygotes for targeted null mutations show reduced astrocyte-associated intermediate filaments, enhanced long-term potentiation and impaired eye-blink conditioning. Aged mutants may show hydrocephaly, reduced myelination and impaired blood-brain barrier.

 
Human Diseases Modeled in Mice Using Gfap (1)    Mutations Annotated to Human Diseases (6)   

Interactions

Gfap interacts with 184 markers (Mir7-2, Mir7b, Mir9-1, ...)

View All

Gene Ontology
(GO)
classifications

All GO classifications: (30 annotations)

Process	astrocyte development, Bergmann glial cell differentiation, ...
Component	astrocyte end-foot, astrocyte projection, ...
Function	integrin binding, kinase binding, ...

External Resources: FuncBase

Expression

Literature Summary: (624 records)

Data Summary: Results (420)    Tissues (205)    Images (120)    Tissue x Stage Matrix (view)

Assay Type	Results
Immunohistochemistry	138
RNA in situ	163
Northern blot	22
Western blot	1
RT-PCR	82
Nuclease S1	14

cDNA source data(248)
External Resources: Allen Institute   GENSAT   GEO   Expression Atlas

Molecular
reagents

All nucleic(271) Genomic(5) cDNA(248) Primer pair(16) Other(2)
Microarray probesets(5)

Other database
links

VEGA Gene Model	OTTMUSG00000003084 (Evidence)
Ensembl Gene Model	ENSMUSG00000020932 (Evidence)
Entrez Gene	14580 (Evidence)
UniGene	1239
DFCI	TC1640428, TC1648992
DoTS	DT.94156536, DT.94245606
NIA Mouse Gene Index	U033490
Consensus CDS Project	CCDS25507.1, CCDS48950.1
International Mouse Knockout Project Status	Gfap

Sequences

Length	Strain/Species
genomic	OTTMUSG00000003084	VEGA Gene Model | MGI Sequence Detail	13577	C57BL/6J
transcript	OTTMUST00000006346	VEGA | MGI Sequence Detail	2648	Not Applicable
polypeptide	OTTMUSP00000002989	VEGA | MGI Sequence Detail	430	Not Applicable

All sequences(48) RefSeq(5) UniProt(2)

Polymorphisms

All PCR and RFLP(19) : PCR(14) RFLP(5) SNPs within 2kb(166 from dbSNP Build 137)

Protein-related
information

Resource	ID	Description
InterPro	IPR006821	Intermediate filament head, DNA-binding domain
InterPro	IPR001664	Intermediate filament protein
InterPro	IPR018039	Intermediate filament protein, conserved site
Protein Ontology	PR:000007939	glial fibrillary acidic protein

References

(Earliest) J:7424 Lewis SA, et al., Sequence of a cDNA clone encoding mouse glial fibrillary acidic protein: structural conservation of intermediate filaments. Proc Natl Acad Sci U S A. 1984 May;81(9):2743-6
(Latest) J:217063 Zou M, et al., Selective neuronal lineages derived from Dll4-expressing progenitors/precursors in the retina and spinal cord. Dev Dyn. 2015 Jan;244(1):86-97
All references(766)
Disease annotation references (3)

Other
accession IDs

MGD-MRK-10055, MGI:2144272