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Hist1h3d Gene Detail
Summary
  • Symbol
    Hist1h3d
  • Name
    histone cluster 1, H3d
  • Synonyms
    H3-b
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448322
    NCBI Gene: 319149
  • Member of
    Hist1 cluster
  • Gene Overview
    MyGene.info: HIST1H3A
  • Alliance
  • Transcription Start Sites
    2 TSS
Location &
Maps
more
  • Sequence Map
    Chr13:23575763-23576266 bp, + strand
  • From NCBI annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 9.80 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    45 from dbSNP Build 142
  • Strain Annotations
    13
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2448322
protein coding gene Chr13:23575763-23577011 (.)
129S1/SvImJ MGP_129S1SvImJ_G0020351
protein coding gene Chr13:20996421-20999900 (+)
A/J no annotation
AKR/J MGP_AKRJ_G0020282
protein coding gene Chr13:20867795-20868354 (+)
BALB/cJ MGP_BALBcJ_G0020299
protein coding gene Chr13:20606303-20619843 (+)
C3H/HeJ MGP_C3HHeJ_G0020104
protein coding gene Chr13:20942535-20943094 (+)
C57BL/6NJ MGP_C57BL6NJ_G0020737
protein coding gene Chr13:21784870-21785429 (+)
CAROLI/EiJ no annotation
CAST/EiJ MGP_CASTEiJ_G0019615
protein coding gene Chr13:20490311-20490730 (+)
CBA/J MGP_CBAJ_G0020055
protein coding gene Chr13:22614485-22615626 (+)
DBA/2J MGP_DBA2J_G0020182
protein coding gene Chr13:20161950-20162872 (+)
FVB/NJ no annotation
LP/J MGP_LPJ_G0020255
protein coding gene Chr13:21321265-21322664 (+)
NOD/ShiLtJ no annotation
NZO/HlLtJ MGP_NZOHlLtJ_G0020776
protein coding gene Chr13:20720896-20722585 (+)
PWK/PhJ no annotation
SPRET/EiJ MGP_SPRETEiJ_G0019193
protein coding gene Chr13:19520812-19522879 (+)
WSB/EiJ MGP_WSBEiJ_G0019680
protein coding gene Chr13:20858030-20858633 (+)



Homology
more
  • Human Ortholog
    HIST1H3A, histone cluster 1 H3 family member a
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HIST1H3A, histone cluster 1 H3 family member a
    Orthology source: HomoloGene
  • Synonyms
    H3/A, H3FA
  • Links
    NCBI Gene ID: 8350
    neXtProt AC: NX_P68431
    UniProt: P68431

  • Chr Location
    6p22.2; chr6:26020490-26020958 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hist1h3d
  • Find Mice (IMSR)
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
less
Representative SequencesLengthStrain/SpeciesFlank
genomic 319149 NCBI Gene Model | MGI Sequence Detail 504 C57BL/6J ±  kb
transcript NM_178204 RefSeq | MGI Sequence Detail 504 C57BL/6  
polypeptide NP_835511 RefSeq | MGI Sequence Detail 136 C57BL/6  
For the selected sequence
Molecular
Reagents
less
  • All nucleic 5
    Genomic 1
    cDNA 4

    Microarray probesets 5
References
more
  • Summaries
    All 23
    Gene Ontology 1
    Phenotypes 8
  • Earliest
    J:182573 Roderick TH, Producing and detecting paracentric chromosomal inversions in mice. Mutat Res. 1971 Jan;11(1):59-69
  • Latest
    J:141688 Goldsworthy M, et al., Role of the transcription factor sox4 in insulin secretion and impaired glucose tolerance. Diabetes. 2008 Aug;57(8):2234-44

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
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last database update
11/06/2018
MGI 6.13
The Jackson Laboratory