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Hist1h3d Gene Detail
Summary
  • Symbol
    Hist1h3d
  • Name
    histone cluster 1, H3d
  • Synonyms
    H3-b
  • Feature Type
    protein coding gene
  • IDs
    MGI:2448322
    NCBI Gene: 319149
  • Member of
    Hist1 cluster
  • Gene Overview
    MyGene.info: HIST1H3A
Location & Maps
more
  • Sequence Map
    Chr13:23575763-23576322 bp, + strand
  • From VEGA annotation of GRCm38

    Mouse Genome Browser

  • Download
    Sequence
      560 bp   ±  kb flank

  • Genome Browsers
  • Genetic Map
    Chromosome 13, 9.80 cM, cytoband A2-A3
  • Mapping Data
    1 experiment
Homology
more
  • Human Ortholog
    HIST1H3A, histone cluster 1 H3 family member a
  • Vertebrate Orthologs
    10
  • Human Ortholog
    HIST1H3A, histone cluster 1 H3 family member a
    Orthology source: HomoloGene, HGNC
  • Synonyms
    H3/A, H3FA
  • Links
    NCBI Gene ID: 8350
    neXtProt AC: NX_P68431

  • Chr Location
    6p22.2; chr6:26020490-26020958 (+)  GRCh38.p2

Mutations,
Alleles, and
Phenotypes
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  • Phenotype Summary
    8 phenotype references
  • All Mutations and Alleles
    2
  • Chemically induced (other)
    1
  • Radiation induced
    1
  • Genomic Mutations
    2 involving Hist1h3d
Gene Ontology
(GO)
Classifications
less
  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
receptor
receptor binding
RNA binding
transcription
transferase
transporter
Biological Process

nucleic acid-templated transcription
carbohydrate derivative metabolism
cell death
cell differentiation
cell proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
  • cDNA Data
Interactions
less
Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic OTTMUSG00000000561 VEGA Gene Model | MGI Sequence Detail 560 C57BL/6J ±  kb
transcript OTTMUST00000001148 VEGA | MGI Sequence Detail 560 Not Applicable  
polypeptide OTTMUSP00000000529 VEGA | MGI Sequence Detail 136 Not Applicable  
For the selected sequence
Polymorphisms
less
  • SNPs within 2kb
    45 from dbSNP Build 142
Molecular
Reagents
less
  • All nucleic 6
    Genomic 1
    cDNA 4
    Other 1

    Microarray probesets 5
References
more
  • Summaries
    All 17
    Gene Ontology 2
    Phenotypes 8
  • Earliest
    J:19916 Moss SB, et al., An alternative pathway of histone mRNA 3' end formation in mouse round spermatids. Nucleic Acids Res. 1994 Aug 11;22(15):3160-6
  • Latest
    J:80094 Marzluff WF, et al., The human and mouse replication-dependent histone genes. Genomics. 2002 Nov;80(5):487-98

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Tumor Biology (MTB), Gene Ontology (GO), MouseCyc
Citing These Resources
Funding Information
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last database update
11/29/2016
MGI 6.06
The Jackson Laboratory