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Slc35f1 Gene Detail
Summary
  • Symbol
    Slc35f1
  • Name
    solute carrier family 35, member F1
  • Feature Type
    protein coding gene
  • IDs
    MGI:2139810
    NCBI Gene: 215085
  • Alliance
  • Transcription Start Sites
    3 TSS
Location &
Maps
more
  • Sequence Map
    Chr10:52690533-53111622 bp, + strand
  • From Ensembl annotation of GRCm38

    View this region in JBrowse

  • Genome Browsers
  • Genetic Map
    Chromosome 10, 26.79 cM
  • Mapping Data
    1 experiment
Strain
Comparison
more
  • SNPs within 2kb
    2266 from dbSNP Build 142
  • Strain Annotations
    18
For selected strains:
Strain Gene Model ID Feature Type Coordinates Select Strains
C57BL/6J MGI_C57BL6J_2139810
protein coding gene Chr10:52690501-53111622 (+)
129S1/SvImJ MGP_129S1SvImJ_G0017227
protein coding gene Chr10:51834602-52278451 (+)
A/J MGP_AJ_G0017203
protein coding gene Chr10:50319523-50741775 (+)
AKR/J MGP_AKRJ_G0017162
protein coding gene Chr10:51294510-51735249 (+)
BALB/cJ MGP_BALBcJ_G0017164
protein coding gene Chr10:50426735-50872034 (+)
C3H/HeJ MGP_C3HHeJ_G0016986
protein coding gene Chr10:51558688-51996510 (+)
C57BL/6NJ MGP_C57BL6NJ_G0017623
protein coding gene Chr10:53476981-53918671 (+)
CAROLI/EiJ MGP_CAROLIEiJ_G0015317
protein coding gene Chr10:47496813-47912333 (+)
CAST/EiJ MGP_CASTEiJ_G0016560
protein coding gene Chr10:51623290-52070595 (+)
CBA/J MGP_CBAJ_G0016959
protein coding gene Chr10:55751354-56217638 (+)
DBA/2J MGP_DBA2J_G0017064
protein coding gene Chr10:49743113-50181730 (+)
FVB/NJ MGP_FVBNJ_G0017058
protein coding gene Chr10:49071990-49485231 (+)
LP/J MGP_LPJ_G0017139
protein coding gene Chr10:51915883-52348711 (+)
NOD/ShiLtJ MGP_NODShiLtJ_G0017087
protein coding gene Chr10:57701076-58171660 (+)
NZO/HlLtJ MGP_NZOHlLtJ_G0017658
protein coding gene Chr10:51197578-51645479 (+)
PWK/PhJ MGP_PWKPhJ_G0016341
protein coding gene Chr10:49583029-50011659 (+)
SPRET/EiJ MGP_SPRETEiJ_G0016126
protein coding gene Chr10:50807135-51257828 (+)
WSB/EiJ MGP_WSBEiJ_G0016625
protein coding gene Chr10:51449302-51890668 (+)



Homology
more
  • Human Ortholog
    SLC35F1, solute carrier family 35 member F1
  • Vertebrate Orthologs
    10
  • Human Ortholog
    SLC35F1, solute carrier family 35 member F1
    Orthology source: HomoloGene, HGNC
  • Synonyms
    C6orf169, dJ230I3.1
  • Links
    NCBI Gene ID: 222553
    neXtProt AC: NX_Q5T1Q4
    UniProt: Q5T1Q4

  • Chr Location
    6q22.2-q22.31; chr6:117907226-118317676 (+)  GRCh38.p7

Mutations,
Alleles, and
Phenotypes
less
  • Phenotype Summary
    2 phenotypes from 1 allele in 2 genetic backgrounds
    13 phenotype references
Phenotype Overview

adipose tissue
behavior/neurological
cardiovascular system
cellular
craniofacial
digestive/alimentary system
embryo
endocrine/exocrine glands
growth/size/body
hearing/vestibular/ear
hematopoietic system
homeostasis/metabolism
immune system
integument
limbs/digits/tail
liver/biliary system
mortality/aging
muscle
neoplasm
nervous system
pigmentation
renal/urinary system
reproductive system
respiratory system
skeleton
taste/olfaction
vision/eye

Click cells to view annotations.
Mice homozygous for a knock-out allele exhibit no detectable phenotypic abnormalities.
Gene Ontology
(GO)
Classifications
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  • All GO Annotations
  • GO References
Molecular Function

carbohydrate derivative binding
cytoskeletal protein binding
DNA binding
enzyme regulator
hydrolase
ligase
lipid binding
oxidoreductase
RNA binding
signaling receptor activity
signaling receptor binding
transcription
transferase
transporter
Biological Process

carbohydrate derivative metabolism
cell death
cell differentiation
cell population proliferation
cellular component organization
establishment of localization
homeostatic process
immune system process
lipid metabolic process
nucleic acid-templated transcription
protein metabolic process
response to stimulus
signaling
system development
Cellular Component

cell projection
cytoplasmic vesicle
cytoskeleton
cytosol
endoplasmic reticulum
endosome
extracellular region
Golgi apparatus
mitochondrion
non-membrane-bounded organelle
nucleus
organelle envelope
organelle lumen
plasma membrane
synapse
vacuole
Click cells to view annotations.
Expression
less
Expression Overview

early conceptus
embryo ectoderm
embryo endoderm
embryo mesoderm
embryo mesenchyme
extraembryonic component
alimentary system
auditory system
branchial arches
cardiovascular system
connective tissue
endocrine system
exocrine system
hemolymphoid system
integumental system
limbs
liver and biliary system
musculoskeletal system
nervous system
olfactory system
reproductive system
respiratory system
urinary system
visual system
Click cells to view annotations.


  • Assay Results
  • Tissues
  • cDNA Data
  • Literature Summary
Interactions
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Sequences &
Gene Models
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Representative SequencesLengthStrain/SpeciesFlank
genomic ENSMUSG00000038602 Ensembl Gene Model | MGI Sequence Detail 421090 C57BL/6J ±  kb
transcript ENSMUST00000105473 Ensembl | MGI Sequence Detail 4941 Not Applicable  
polypeptide ENSMUSP00000101113 Ensembl | MGI Sequence Detail 408 Not Applicable  
For the selected sequence
Protein
Information
less
Molecular
Reagents
less
  • All nucleic 33
    cDNA 32
    Primer pair 1

    Microarray probesets 4
References
more
  • Summaries
    All 34
    Developmental Gene Expression 1
    Gene Ontology 2
    Phenotypes 13
  • Earliest
    J:109968 Roderick TH, et al., Nineteen paracentric chromosomal inversions in mice. Genetics. 1974 Jan;76(1):109-17
  • Latest
    J:213427 Adissu HA, et al., Histopathology reveals correlative and unique phenotypes in a high-throughput mouse phenotyping screen. Dis Model Mech. 2014 May;7(5):515-24

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources
Funding Information
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last database update
08/06/2019
MGI 6.14
The Jackson Laboratory