Nfkb2 MGI Mouse Gene Detail - MGI:1099800 - nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100

Symbol

Nfkb2
Name

nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100
Synonyms

NF kappaB2, p52

Feature Type

protein coding gene
IDs

MGI:1099800
NCBI Gene: 18034
Gene Overview

MyGene.info: NFKB2
Alliance

gene page
Transcription Start Sites

19 TSS

Sequence Map

Chr19:46304320-46312090 bp, + strand
From NCBI annotation of GRCm38

View this region in JBrowse
Genome Browsers

Ensembl | UCSC | NCBI

Genetic Map

Chromosome 19, 38.80 cM, cytoband C3-D2
Mapping Data

8 experiments

SNPs within 2kb

35 from dbSNP Build 142
Strain Annotations

18
PCR

1

For selected strains:

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_1099800	protein coding gene	Chr19:46304320-46312385 (+)
129S1/SvImJ	MGP_129S1SvImJ_G0025203	protein coding gene	Chr19:45985843-45993056 (+)
A/J	MGP_AJ_G0025179	protein coding gene	Chr19:43721500-43728833 (+)
AKR/J	MGP_AKRJ_G0025148	protein coding gene	Chr19:45138282-45145723 (+)
BALB/cJ	MGP_BALBcJ_G0025174	protein coding gene	Chr19:43780476-43787738 (+)
C3H/HeJ	MGP_C3HHeJ_G0024934	protein coding gene	Chr19:45306184-45313399 (+)
C57BL/6NJ	MGP_C57BL6NJ_G0025617	protein coding gene	Chr19:47134670-47143311 (+)
CAROLI/EiJ	MGP_CAROLIEiJ_G0023031	protein coding gene	Chr19:42960176-42967531 (+)
CAST/EiJ	MGP_CASTEiJ_G0024399	protein coding gene	Chr19:45101742-45110723 (+)
CBA/J	MGP_CBAJ_G0024914	protein coding gene	Chr19:49492531-49499743 (+)
DBA/2J	MGP_DBA2J_G0025046	protein coding gene	Chr19:43544859-43552226 (+)
FVB/NJ	MGP_FVBNJ_G0025007	protein coding gene	Chr19:43322007-43329243 (+)
LP/J	MGP_LPJ_G0025132	protein coding gene	Chr19:45895396-45903766 (+)
NOD/ShiLtJ	MGP_NODShiLtJ_G0025038	protein coding gene	Chr19:48835069-48842156 (+)
NZO/HlLtJ	MGP_NZOHlLtJ_G0025675	protein coding gene	Chr19:45246268-45253480 (+)
PWK/PhJ	MGP_PWKPhJ_G0024148	protein coding gene	Chr19:43490797-43498601 (+)
SPRET/EiJ	MGP_SPRETEiJ_G0023952	protein coding gene	Chr19:43898826-43906196 (+)
WSB/EiJ	MGP_WSBEiJ_G0024469	protein coding gene	Chr19:45386634-45395101 (+)

Human Ortholog

NFKB2, nuclear factor kappa B subunit 2

Vertebrate Orthologs

10

Human Ortholog

NFKB2, nuclear factor kappa B subunit 2
Orthology source: HomoloGene, HGNC
Synonyms

CVID10, H2TF1, LYT10, LYT-10, NF-kB2, p100, p49/p100, p52
Links

HGNC:7795

NCBI Gene ID: 4791

neXtProt AC: NX_Q00653

UniProt: Q00653
Chr Location

10q24.32; chr10:102394110-102402529 (+) GRCh38.p7

HomoloGene

Vertebrate Homology Class 1873
1 human;1 mouse;1 rat;1 chimpanzee;1 cattle;1 dog;1 chicken;1 zebrafish;1 frog, western clawed;1 macaque, rhesus
HCOP

human homology predictions: NFKB2
Protein SuperFamily

transcription factor NF-kappa-B2
Gene Tree

Nfkb2

Diseases

1 with Nfkb2 mouse models; 1 with human NFKB2 associations

Human Disease

Mouse Models

common variable immunodeficiency

IDs

View 3 models

Click on a disease name to see all genes associated with that disease.

Mutations/Alleles

2 with disease annotations

References

1 with disease annotations

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Phenotype Summary

126 phenotypes from 10 alleles in 13 genetic backgrounds
40 phenotypes from multigenic genotypes
2 images
88 phenotype references

Phenotype Overview

Blue squares indicate phenotypes directly attributed to mutations/alleles of this gene.

adipose tissue	behavior/neurological	cardiovascular system	cellular	craniofacial	digestive/alimentary system	embryo	endocrine/exocrine glands	growth/size/body	hearing/vestibular/ear	hematopoietic system	homeostasis/metabolism	immune system	integument	limbs/digits/tail	liver/biliary system	mortality/aging	muscle	neoplasm	nervous system	pigmentation	renal/urinary system	reproductive system	respiratory system	skeleton	taste/olfaction	vision/eye

Click cells to view annotations.

All Mutations and Alleles

16
Chemically induced (ENU)

6
Targeted

8
Transgenic

2
Incidental Mutations

Mutagenetix , APF , CvDC
Find Mice (IMSR)

38 strains or lines available
Comparison Matrix

Gene Expression + Phenotype

Homozygotes for targeted null mutations exhibit gastric hyperplasia, enlarged lymph nodes, enhanced cytokine production by activated T cells, absence of Peyer's patches, increased susceptibility to Leishmania major, and early postnatal mortality.

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All GO Annotations

34
GO References

10

External Resources

FuncBase

Molecular Function

carbohydrate derivative binding	cytoskeletal protein binding	DNA binding	enzyme regulator	hydrolase	ligase	lipid binding	oxidoreductase	RNA binding	signaling receptor activity	signaling receptor binding	transcription	transferase	transporter

Biological Process

carbohydrate derivative metabolism	cell death	cell differentiation	cell population proliferation	cellular component organization	establishment of localization	homeostatic process	immune system process	lipid metabolic process	nucleic acid-templated transcription	protein metabolic process	response to stimulus	signaling	system development

Cellular Component

cell projection	cytoplasmic vesicle	cytoskeleton	cytosol	endoplasmic reticulum	endosome	extracellular region	Golgi apparatus	mitochondrion	non-membrane-bounded organelle	nucleus	organelle envelope	organelle lumen	plasma membrane	synapse	vacuole

Click cells to view annotations.

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Expression Overview

GXD's primary emphasis is on endogenous gene expression during development. Click on grid cells to view annotations.

Blue cells = expressed in wild-type.
Gray triangles = other expression annotations only
(e.g. absence of expression or data from mutants).

early conceptus	embryo ectoderm	embryo endoderm	embryo mesoderm	embryo mesenchyme	extraembryonic component	alimentary system	auditory system	branchial arches	cardiovascular system	connective tissue	endocrine system	exocrine system	hemolymphoid system	integumental system	limbs	liver and biliary system	musculoskeletal system	nervous system	olfactory system	reproductive system	respiratory system	urinary system	visual system

Click cells to view annotations.

Assay Results

76
Tissues

45
cDNA Data

13
Literature Summary

14

Images

Tissue x Stage Matrix

Comparison Matrix

Gene Expression + Phenotype

Other Mouse Links

Allen Institute

GEO

Expression Atlas
Other Vertebrate Links

Xenbase nfkb2

ZFIN nfkb2

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Nfkb2 interacts with 48 markers (Mir15a, Mir15b, Mir16-1, ...) View All

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All Sequences

82
RefSeq

8
UniProt

10
CCDS

CCDS29874.1

Ensembl

ENSMUSG00000025225 (Evidence)
NCBI Gene

18034

			Length	Strain/Species	Flank
genomic	18034	NCBI Gene Model \| MGI Sequence Detail	7771	C57BL/6J	± kb
transcript	NM_019408	RefSeq \| MGI Sequence Detail	3205	C57BL/6
polypeptide	Q9WTK5	UniProt \| EBI \| MGI Sequence Detail	899	Not Applicable

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UniProt

10 Sequences
Protein Ontology

PR:000011178 nuclear factor NF-kappa-B p100 subunit

(term hierarchy)
PDB

3JV5, 3JV6
InterPro Domains

IPR002110 Ankyrin repeat

IPR020683 Ankyrin repeat-containing domain

IPR036770 Ankyrin repeat-containing domain superfamily

IPR000488 Death domain

IPR011029 Death-like domain superfamily

IPR014756 Immunoglobulin E-set

IPR013783 Immunoglobulin-like fold

IPR002909 IPT domain

IPR000451 NF-kappa-B/Dorsal

IPR033926 NFkappaB IPT domain

IPR008967 p53-like transcription factor, DNA-binding

IPR032397 Rel homology dimerisation domain

IPR030492 Rel homology domain, conserved site

IPR011539 Rel homology domain (RHD), DNA-binding domain

IPR037059 Rel homology domain (RHD), DNA-binding domain superfamily

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All nucleic 28

Genomic 12

cDNA 13

Primer pair 2

Other 1

Microarray probesets 3

Summaries

All 180

Developmental Gene Expression 14

Diseases 1

Gene Ontology 10

Phenotypes 88
Earliest

J:54118 Verma IM, et al., Rel/NF-kappa B/I kappa B family: intimate tales of association and dissociation. Genes Dev. 1995 Nov 15;9(22):2723-35
Latest

J:275850 Hou Y, et al., Non-canonical NF-kappaB Antagonizes STING Sensor-Mediated DNA Sensing in Radiotherapy. Immunity. 2018 Sep 18;49(3):490-503.e4

TSS for Nfkb2:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr156722	Chr19:46304390-46304406 (+)	78 bp
Tssr156723	Chr19:46304709-46304811 (+)	440 bp
Tssr156724	Chr19:46304830-46304839 (+)	515 bp
Tssr156725	Chr19:46305682-46305741 (+)	1,392 bp
Tssr156726	Chr19:46305745-46305787 (+)	1,446 bp
Tssr156727	Chr19:46305856-46305870 (+)	1,543 bp
Tssr156728	Chr19:46305884-46305907 (+)	1,576 bp
Tssr156729	Chr19:46305909-46305927 (+)	1,598 bp
Tssr156730	Chr19:46305943-46305961 (+)	1,632 bp
Tssr156731	Chr19:46305972-46305981 (+)	1,657 bp
Tssr156732	Chr19:46306023-46306032 (+)	1,708 bp
Tssr156733	Chr19:46306093-46306109 (+)	1,781 bp
Tssr156734	Chr19:46306117-46306154 (+)	1,816 bp
Tssr156735	Chr19:46306160-46306171 (+)	1,846 bp
Tssr156736	Chr19:46306243-46306255 (+)	1,929 bp
Tssr156737	Chr19:46306258-46306263 (+)	1,941 bp
Tssr156738	Chr19:46307351-46307373 (+)	3,042 bp
Tssr156741	Chr19:46310205-46310230 (+)	5,898 bp
Tssr156742	Chr19:46310302-46310317 (+)	5,990 bp

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer & Copyright Notice Send questions and comments to User Support.	last database update 10/08/2019 MGI 6.14