rs254446051 SNP Detail

Summary

• ID
  rs254446051
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122521675 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CTGAGCCATC TCACCAGCCC CCGAAGGAAG AACTCTTAAC
  CACTCAGCCA GAATGAAGTG TCAATATGAA CTTTGGAGGG AGCGGGCACA AACAGTTAAG
  K
  CCCAATTTCT AGCTATTATC CCAGAGTTCA GTTTTAAATC AGGTGACTTC CTGGTAGGAG
  GAATGTGTAG ATATGGGGTG GGGGTGGGGT TCACCAACA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320914161	CHEV_3_122430944	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs254446051					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122521675 () rs orientation: forward

Symbol	Name	Function Class
Pde5a	phosphodiesterase 5A, cGMP-specific	1147 bp upstream
Rr584392	regulatory region 584392	442 bp proximal
Rr584393	regulatory region 584393	896 bp proximal
Rr584394	regulatory region 584394	1054 bp proximal
Rr584395	regulatory region 584395	1555 bp proximal
Tssr31509	transcription start site region 31509	918 bp upstream
Tssr31510	transcription start site region 31510	978 bp upstream
Tssr31511	transcription start site region 31511	1093 bp upstream
Tssr31512	transcription start site region 31512	1137 bp upstream
Tssr31513	transcription start site region 31513	1172 bp upstream
Tssr31514	transcription start site region 31514	1683 bp upstream
Tssr31515	transcription start site region 31515	1824 bp upstream
Tssr31516	transcription start site region 31516	1844 bp upstream
Tssr31517	transcription start site region 31517	1892 bp upstream