Gm10288 Pseudogene Detail

Summary

• Symbol
  Gm10288
• Name
  predicted gene 10288

• Feature Type
  pseudogene
• IDs
  MGI:3704227
  NCBI Gene: 100040540
• Alliance
  genome feature page
• Transcription Start Sites
  1 TSS

Location &
Maps

• Sequence Map
  Chr3:146544566-146545102 bp, - strand

  From Ensembl annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 3, 72.28 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  169 from dbSNP Build 142
• Strain Annotations
  9

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3704227	pseudogene	Chr3:146544530-146545120 (-)
129S1/SvImJ	ENSMUSG00200004013	pseudogene	Chr3:143466248-143466784 (-)
A/J	ENSMUSG00195003568	pseudogene	Chr3:143578957-143579493 (-)
AKR/J	no annotation
BALB/cJ	ENSMUSG00180027037	pseudogene	Chr3:143449361-143449897 (-)
C3H/HeJ	ENSMUSG00175019975	pseudogene	Chr3:143031309-143031845 (-)
C57BL/6NJ	ENSMUSG00215021659	pseudogene	Chr3:143734190-143734726 (-)
CAROLI/EiJ	no annotation
CAST/EiJ	no annotation
CBA/J	ENSMUSG00210005240	pseudogene	Chr3:143708654-143709190 (-)
DBA/2J	no annotation
FVB/NJ	no annotation
JF1/MsJ	no annotation
LP/J	ENSMUSG00230019818	pseudogene	Chr3:146219619-146220155 (-)
NOD/ShiLtJ	no annotation
NZO/HlLtJ	no annotation
PWK/PhJ	no annotation
SPRET/EiJ	no annotation
WSB/EiJ	ENSIUOG00005015852	pseudogene	Chr3:143778580-143779116 (-)

Homology

• Gene Tree
  Gm10288
  

Human Diseases

• References
  1 with disease annotations

Mutations,
Alleles, and
Phenotypes

• Phenotype Summary
  3 phenotype references
  

• All Mutations and Alleles
  2
• Radiation induced
  1
• Targeted
  1
• Genomic Mutations
  2 involving Gm10288
• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  9 strains or lines available

Expression

• Assay Results
  597

Tissue x Stage Matrix

• Other Mouse Links
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  13
• RefSeq
  1

• Ensembl
  ENSMUSG00000070343 (Evidence)
• NCBI Gene
  100040540

Representative Sequences			Length	Strain/Species
genomic	ENSMUSG00000070343	Ensembl Gene Model | MGI Sequence Detail	537	C57BL/6J
transcript	ENSMUST00000084614	Ensembl | MGI Sequence Detail	537	Not Applicable

References

• Summaries
  All 7

  Diseases 1

  Phenotypes 3
• Earliest
  J:70677 Cook SA, et al., Mouse paracentric inversion In(3)55Rk mutates the urate oxidase gene. Cytogenet Cell Genet. 2001;93(1-2):77-82
• Latest
  J:302829 Lu J, et al., Mouse models for human hyperuricaemia: a critical review. Nat Rev Rheumatol. 2019 Jul;15(7):413-426

TSS for Gm10288:

(View these features in JBrowse)

Transcription Start Site	Location	Distance from Gene 5'-end
Tssr36070	Chr3:146545120-146545122 (-)	-19 bp