Gm10549 Gene Detail

Summary

• Symbol
  Gm10549
• Name
  predicted gene 10549

• Feature Type
  lncRNA gene
• IDs
  MGI:3641986
  NCBI Gene: 433171
• Alliance
  genome feature page

Location &
Maps

• Sequence Map
  Chr18:33597216-33607763 bp, + strand

  From NCBI annotation of GRCm39
  

• View this region in JBrowse
  

• Genome Browsers
  Ensembl | UCSC | NCBI

• Genetic Map
  Chromosome 18, 18.18 cM
• Mapping Data
  1 experiment

Strain
Comparison

• SNPs within 2kb
  366 from dbSNP Build 142
• Strain Annotations
  18

Strain	Gene Model ID	Feature Type	Coordinates
C57BL/6J	MGI_C57BL6J_3641986	lncRNA gene	Chr18:33597216-33607763 (+)
129S1/SvImJ	ENSMUSG00200045226	lncRNA gene	Chr18:30585043-30594516 (+)
A/J	ENSMUSG00195038889	lncRNA gene	Chr18:30768698-30779199 (+)
AKR/J	ENSMUSG00220017900	lncRNA gene	Chr18:30722330-30731798 (+)
BALB/cJ	ENSMUSG00180021079	lncRNA gene	Chr18:31212102-31221575 (+)
C3H/HeJ	ENSMUSG00175040645	lncRNA gene	Chr18:30726689-30736161 (+)
C57BL/6NJ	ENSMUSG00215028452	lncRNA gene	Chr18:30465238-30475792 (+)
CAROLI/EiJ	no annotation
CAST/EiJ	ENSTCUG00005025326	lncRNA gene	Chr18:30356625-30367361 (+)
CBA/J	ENSMUSG00210021832	lncRNA gene	Chr18:30760680-30771174 (+)
DBA/2J	ENSMUSG00185021431	lncRNA gene	Chr18:30695245-30705738 (+)
FVB/NJ	ENSMUSG00205037178	lncRNA gene	Chr18:30419664-30429128 (+)
JF1/MsJ	ENSUMUG00000050527	lncRNA gene	Chr18:30808093-30818868 (+)
LP/J	ENSMUSG00230048925	lncRNA gene	Chr18:32781990-32791459 (+)
NOD/ShiLtJ	ENSMUSG00190022499	lncRNA gene	Chr18:30480518-30489991 (+)
NZO/HlLtJ	ENSMUSG00225047617	lncRNA gene	Chr18:32690516-32699981 (+)
PWK/PhJ	ENSLUMG00010013604	lncRNA gene	Chr18:30965069-30975848 (+)
SPRET/EiJ	ENSMSPG00010024915	lncRNA gene	Chr18:31016244-31030991 (+)
WSB/EiJ	ENSIUOG00005008507	lncRNA gene	Chr18:30472714-30483303 (+)

Homology

• Gene Tree
  Gm10549
  

Mutations,
Alleles, and
Phenotypes

• Incidental Mutations
  Mutagenetix , APF
• Find Mice (IMSR)
  34 strains or lines available

Expression

• Assay Results
  597
• cDNA Data
  2

Tissue x Stage Matrix

• Other Mouse Links
  Allen Institute
  GEO
  Expression Atlas

Sequences &
Gene Models

• All Sequences
  25
• RefSeq
  1
• UniProt
  1

• Ensembl
  ENSMUSG00000118292 (Evidence)
• NCBI Gene
  433171

Representative Sequences			Length	Strain/Species
genomic	433171	NCBI Gene Model | MGI Sequence Detail	10548	C57BL/6J
transcript	NR_045415	RefSeq | MGI Sequence Detail	2712	C57BL/6
polypeptide	Q3URY4	UniProt | EBI | MGI Sequence Detail	149	Not Applicable

Protein
Information

• UniProt
  1 Sequence

Molecular
Reagents

• All nucleic 2

  cDNA 2

  
  

  Microarray probesets 1

References

• Summaries
  All 8
• Earliest
  J:23000 MGD Nomenclature Committee, Nomenclature Committee Use. 1995-02-14;
• Latest
  J:144086 Mouse Genome Informatics Scientific Curators, Mouse Microarray Data Integration in Mouse Genome Informatics, the Affymetrix GeneChip Mouse Gene 1.0 ST Array Platform. Database Download. 2009;