Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  16
• Reference
  J:69920 Pletcher MT, et al., Use of comparative physical and sequence mapping to annotate mouse chromosome 16 and human chromosome 21. Genomics. 2001 May 15;74(1):45-54
• ID
  MGI:2136929

Genes

Gene	Assay Type
41.MHAa75d5.seq	overlapping clones, direct sequencing, sequence analysis
D16Jhu21	overlapping clones, direct sequencing, sequence analysis
D16Jhu22	overlapping clones, direct sequencing, sequence analysis
D16Jhu24	overlapping clones, direct sequencing, sequence analysis
D16Jhu25	overlapping clones, direct sequencing, sequence analysis
Setd4	overlapping clones, direct sequencing, sequence analysis
Cbr1	overlapping clones, direct sequencing, sequence analysis
D16Jhu27	overlapping clones, direct sequencing, sequence analysis
D16Jhu28	overlapping clones, direct sequencing, sequence analysis
Cbr3	overlapping clones, direct sequencing, sequence analysis
D16Mit204	overlapping clones, direct sequencing, sequence analysis
Dop1b	overlapping clones, direct sequencing, sequence analysis
Morc3	overlapping clones, direct sequencing, sequence analysis
Chaf1b	overlapping clones, direct sequencing, sequence analysis
D16Jhu2	overlapping clones, direct sequencing, sequence analysis
Cldn14	overlapping clones, direct sequencing, sequence analysis
D16Jhu4	overlapping clones, direct sequencing, sequence analysis
Sim2	overlapping clones, direct sequencing, sequence analysis
D16Jhu3	overlapping clones, direct sequencing, sequence analysis
Hlcs	overlapping clones, direct sequencing, sequence analysis
Hlcs	overlapping clones, direct sequencing, sequence analysis
D16Jhu35	overlapping clones, direct sequencing, sequence analysis
D16Jhu36	overlapping clones, direct sequencing, sequence analysis
Pigp	overlapping clones, direct sequencing, sequence analysis
D16Jhu37	overlapping clones, direct sequencing, sequence analysis
Ttc3	overlapping clones, direct sequencing, sequence analysis
Vps26c	overlapping clones, direct sequencing, sequence analysis
D16Jhu8	overlapping clones, direct sequencing, sequence analysis
D16Jhu9	overlapping clones, direct sequencing, sequence analysis
Dyrk1a	overlapping clones, direct sequencing, sequence analysis
Kcnj6	overlapping clones, direct sequencing, sequence analysis
D16H21S337E	overlapping clones, direct sequencing, sequence analysis
D16Jhu38	overlapping clones, direct sequencing, sequence analysis
D16Jhu5	overlapping clones, direct sequencing, sequence analysis
D16Jhu12	overlapping clones, direct sequencing, sequence analysis
D16Jhu39	overlapping clones, direct sequencing, sequence analysis
Kcnj15	overlapping clones, direct sequencing, sequence analysis
D16Jhu40	overlapping clones, direct sequencing, sequence analysis
Erg	overlapping clones, direct sequencing, sequence analysis
MHAa83a1.seq	overlapping clones, direct sequencing, sequence analysis
D16Jhu41	overlapping clones, direct sequencing, sequence analysis
D16Jhu44	overlapping clones, direct sequencing, sequence analysis
Ets2	overlapping clones, direct sequencing, sequence analysis
D16Jhu48	overlapping clones, direct sequencing, sequence analysis
Psmg1	overlapping clones, direct sequencing, sequence analysis
Brwd1	overlapping clones, direct sequencing, sequence analysis
D16Jhu58e	overlapping clones, direct sequencing, sequence analysis
Hmgn1	overlapping clones, direct sequencing, sequence analysis
Get1	overlapping clones, direct sequencing, sequence analysis
Sh3bgr	overlapping clones, direct sequencing, sequence analysis
D16Jhu62	overlapping clones, direct sequencing, sequence analysis
B3galt5	overlapping clones, direct sequencing, sequence analysis
D16Jhu83e	overlapping clones, direct sequencing, sequence analysis
D16Jhu13	overlapping clones, direct sequencing, sequence analysis
Itgb2l	overlapping clones, direct sequencing, sequence analysis
Pcp4	overlapping clones, direct sequencing, sequence analysis
D16Jhu14	overlapping clones, direct sequencing, sequence analysis
Dscam	overlapping clones, direct sequencing, sequence analysis
D16Jhu66	overlapping clones, direct sequencing, sequence analysis
36.MHAa77c12.seq	overlapping clones, direct sequencing, sequence analysis
D16Jhu68	overlapping clones, direct sequencing, sequence analysis
D16Jhu70	overlapping clones, direct sequencing, sequence analysis
D16Jhu71	overlapping clones, direct sequencing, sequence analysis
D16Jhu16	overlapping clones, direct sequencing, sequence analysis
D16Jhu72	overlapping clones, direct sequencing, sequence analysis
D16Jhu18	overlapping clones, direct sequencing, sequence analysis
D16Jhu73	overlapping clones, direct sequencing, sequence analysis
Bace2	overlapping clones, direct sequencing, sequence analysis
Mx1	overlapping clones, direct sequencing, sequence analysis
Fam3b	overlapping clones, direct sequencing, sequence analysis
Mx2	overlapping clones, direct sequencing, sequence analysis
Tmprss2	overlapping clones, direct sequencing, sequence analysis
D16Jhu76	overlapping clones, direct sequencing, sequence analysis
D16Jhu78	overlapping clones, direct sequencing, sequence analysis
D16Jhu79	overlapping clones, direct sequencing, sequence analysis
D16Mit106	overlapping clones, direct sequencing, sequence analysis
D16Jhu80	overlapping clones, direct sequencing, sequence analysis
D16Jhu20	overlapping clones, direct sequencing, sequence analysis
D16Jhu29
D16Jhu42
D16Jhu45
D16Jhu46
D16Jhu47
D16Jhu49
D16Jhu50
D16Jhu51
D16Jhu52
D16Jhu53
D16Jhu54
D16Jhu55
D16Jhu56
D16Jhu57
D16Jhu59
D16Jhu60
D16Jhu61
D16Jhu63
D16Jhu64
D16Jhu65
D16Jhu67
D16Jhu69
D16Jhu74
D16Jhu75
D16Jhu77
D16Jhu81
D16Jhu31e

Notes

• Experiment
  The authors constructed a 4.5 Mb physical map on mouse Chromosome 16 that shows conserved linkage with the Down's syndrome region on hu7man chromosome 21. A minimum tiling path across the interval was constructed using PACs. "Low-pass" (2.2 X) mouse sequence from the contig was ordered and oriented across 510 kb of finished human Chr 21 sequence. Using comparative sequence analysis, the order of markers in this region of mouse chromosome 16 was determined to be: centromere - 41.MHAa75d5.seq - D16Jhu21 - D16Jhu22 - D16Jhu24 - D16Jhu25 - ORF21 - Cbr1 - D16Jhu27 - D16Jhu28 - Cbr3 - D16Mit204 - 2610510B01Rik - D16Jhu32e - Chaf1b - D16Jhu2 - Cldn14 - D16Jhu4 - 5'- Sim2 - D16Jhu3 - Sim2 - 3' - D16Jhu34 - Hlcs - D16Jhu35 - D16Jhu36 - Dcrc - D16Jhu37 - Ttc3 - Dscr3 - D16Jhu8 - D16Jhu9 - Dyrk1a - Kcnj6 - D16H21S337E - D16Jhu38 - D16Jhu5 - D16Jhu12 - D16Jhu39 - Kcnj15 - D16Jhu40 - Erg - MHAa83a1.seq - D16Jhu41 - D16Jhu44 - Ets2 - D16Jhu48 - Dscr2 - Wdr9 - D16Jhu58e - Hmgn1 - Wrb - Sh3bgr - D16Jhu62 - B3galt5 - D16Jhu83e - D16Jhu13 - Itgb2l - Pcp4 - D16Jhu14 - 3'- Dscam - D16Jhu66 - 36.MHAa77c12.seq - D16Jhu68 - D16Jhu70 - D16Jhu71 - D16Jhu16 - Dscam - 5' - D16Jhu72 - D16Jhu18 - D16Jhu73 - Bace2 - Mx1 - ORF9 - Mx2 - Tmprss2 - D16Jhu76 - D16Jhu78 - D16Jhu79 - D16Mit106 - D16Jhu80 - D16Jhu20 - telomere. The Markers listed here after D16Jhu20 also mapped within this region of mouse Chromosome 16.