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Mapping Data
Experiment
  • Experiment
    TEXT-Physical Mapping
  • Chromosome
    1
  • Reference
    J:68343 Doudney K, et al., Comparative physical and transcript maps of approximately 1 Mb around loop-tail, a gene for severe neural tube defects on distal mouse chromosome 1 and human chromosome 1q22-q23. Genomics. 2001 Mar 1;72(2):180-92
  • ID
    MGI:2135402
Genes
GeneAlleleAssay TypeDescription
F11r overlapping clones, direct sequencing
D1Dau7e overlapping clones, direct sequencing
Ly9 overlapping clones, direct sequencing
Cd48 overlapping clones, direct sequencing
Slamf1 overlapping clones, direct sequencing
D1Mit113 overlapping clones, direct sequencing
Cd84 overlapping clones, direct sequencing
Vangl2 Vangl2Lp overlapping clones, direct sequencing
340L6T7 overlapping clones, direct sequencing
Nhlh1 overlapping clones, direct sequencing
D1Sta2 overlapping clones, direct sequencing
Ncstn overlapping clones, direct sequencing
Copa overlapping clones, direct sequencing
Pex19 overlapping clones, direct sequencing
Dcaf8 overlapping clones, direct sequencing
Pea15a overlapping clones, direct sequencing
Casq1 overlapping clones, direct sequencing
446G11T7 overlapping clones, direct sequencing
D1Sta3 overlapping clones, direct sequencing
Atp1a4 overlapping clones, direct sequencing
423N13T7 overlapping clones, direct sequencing
378C5T7 overlapping clones, direct sequencing
Atp1a2 overlapping clones, direct sequencing
Igsf8 overlapping clones, direct sequencing
Kcnj9 overlapping clones, direct sequencing
644I21T7 overlapping clones, direct sequencing
Kcnj10 overlapping clones, direct sequencing
Igsf9 overlapping clones, direct sequencing
Tagln2 overlapping clones, direct sequencing
546G1T7 overlapping clones, direct sequencing
Cfap45 overlapping clones, direct sequencing
32.MMHAP50FRC11.seq overlapping clones, direct sequencing
Crp overlapping clones, direct sequencing
416F4T7
Notes
  • Experiment
    The authors constructed a YAC/BAC/PAC contig spanning a 1Mb region around the Lp region on mouse Chromosome 1. Using recombination data from polymorphic markers, the Lp critical region was narrowed to a 620kb segment between D1Mit113 and 644ETD8 The order of markers in the 1Mb region was determined to be : centromere - AA638916 - D1Dau7e - Ly9 - Cd48 - Slam - D1Mit113 - Cd84 - Vangl2 - 340L6T7 - Nhlh1 - D1Sta2 - Ncstn - Copa - Pex19 - D1Ucla4 - Pea15 - Casq1 - 446G11T7 - D1Sta3 - Atp1a4 - 423N13T7 - 378C5T7-Atp1a2 - Igsf8 - Kcnj9 - 644I21T7 - Kcnj10 - 644ETD8 - Tagln2 - 546G1T7 - Nesg1 - 32.MMHAP50FRC11.seq - Crp - telomere. 416F4T7 was use to identify Kcnj10.

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
07/05/2024
MGI 6.24
The Jackson Laboratory