Mapping Data

Experiment

• Experiment
  TEXT-Physical Mapping
• Chromosome
  1
• Reference
  J:68343 Doudney K, et al., Comparative physical and transcript maps of approximately 1 Mb around loop-tail, a gene for severe neural tube defects on distal mouse chromosome 1 and human chromosome 1q22-q23. Genomics. 2001 Mar 1;72(2):180-92
• ID
  MGI:2135402

Genes

Gene	Allele	Assay Type
F11r		overlapping clones, direct sequencing
D1Dau7e		overlapping clones, direct sequencing
Ly9		overlapping clones, direct sequencing
Cd48		overlapping clones, direct sequencing
Slamf1		overlapping clones, direct sequencing
D1Mit113		overlapping clones, direct sequencing
Cd84		overlapping clones, direct sequencing
Vangl2	Vangl2^Lp	overlapping clones, direct sequencing
340L6T7		overlapping clones, direct sequencing
Nhlh1		overlapping clones, direct sequencing
D1Sta2		overlapping clones, direct sequencing
Ncstn		overlapping clones, direct sequencing
Copa		overlapping clones, direct sequencing
Pex19		overlapping clones, direct sequencing
Dcaf8		overlapping clones, direct sequencing
Pea15a		overlapping clones, direct sequencing
Casq1		overlapping clones, direct sequencing
446G11T7		overlapping clones, direct sequencing
D1Sta3		overlapping clones, direct sequencing
Atp1a4		overlapping clones, direct sequencing
423N13T7		overlapping clones, direct sequencing
378C5T7		overlapping clones, direct sequencing
Atp1a2		overlapping clones, direct sequencing
Igsf8		overlapping clones, direct sequencing
Kcnj9		overlapping clones, direct sequencing
644I21T7		overlapping clones, direct sequencing
Kcnj10		overlapping clones, direct sequencing
Igsf9		overlapping clones, direct sequencing
Tagln2		overlapping clones, direct sequencing
546G1T7		overlapping clones, direct sequencing
Cfap45		overlapping clones, direct sequencing
32.MMHAP50FRC11.seq		overlapping clones, direct sequencing
Crp		overlapping clones, direct sequencing
416F4T7

Notes

• Experiment
  The authors constructed a YAC/BAC/PAC contig spanning a 1Mb region around the Lp region on mouse Chromosome 1. Using recombination data from polymorphic markers, the Lp critical region was narrowed to a 620kb segment between D1Mit113 and 644ETD8 The order of markers in the 1Mb region was determined to be : centromere - AA638916 - D1Dau7e - Ly9 - Cd48 - Slam - D1Mit113 - Cd84 - Vangl2 - 340L6T7 - Nhlh1 - D1Sta2 - Ncstn - Copa - Pex19 - D1Ucla4 - Pea15 - Casq1 - 446G11T7 - D1Sta3 - Atp1a4 - 423N13T7 - 378C5T7-Atp1a2 - Igsf8 - Kcnj9 - 644I21T7 - Kcnj10 - 644ETD8 - Tagln2 - 546G1T7 - Nesg1 - 32.MMHAP50FRC11.seq - Crp - telomere. 416F4T7 was use to identify Kcnj10.