Comparative GO Graph (mouse, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes
  • Mouse genes Tlr13
  • Rat genes Tlr13
  • Zfish genes tlr21
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Tlr13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	Tlr13	IPI	UniProtKB:Q6R5N8	Mouse	MGI:MGI:5918323|PMID:26323037
Molecular Function	GO:0042802	identical protein binding	Tlr13	IPI	PR:Q6R5N8	Mouse	PMID:21131352
Molecular Function	GO:0005515	protein binding	Tlr13	IPI	UniProtKB:Q8VCW4	Mouse	MGI:MGI:4457250|PMID:17452530
Molecular Function	GO:0005515	protein binding	Tlr13	IPI	PR:P22366	Mouse	PMID:21131352
Molecular Function	GO:0019843	rRNA binding	Tlr13	IDA		Mouse	MGI:MGI:5436353|PMID:22821982
Molecular Function	GO:0019843	rRNA binding	Tlr13	IDA		Mouse	MGI:MGI:5447272|PMID:22896636
Cellular Component	GO:0005737	cytoplasm	Tlr13	IDA		Mouse	PMID:21131352
Cellular Component	GO:0005783	endoplasmic reticulum	tlr21	IDA		Zfish	PMID:24282308
Cellular Component	GO:0005768	endosome	Tlr13	IDA		Mouse	MGI:MGI:5447272|PMID:22896636
Biological Process	GO:0019731	antibacterial humoral response	tlr21	IDA		Zfish	PMID:24282308
Biological Process	GO:0045087	innate immune response	Tlr13	IDA		Mouse	MGI:MGI:5447272|PMID:22896636
Biological Process	GO:0045087	innate immune response	Tlr13	IDA		Mouse	MGI:MGI:5436353|PMID:22821982
Biological Process	GO:0002755	MyD88-dependent toll-like receptor signaling pathway	Tlr13	IGI	MGI:MGI:108005	Mouse	PMID:21131352
Biological Process	GO:0002221	pattern recognition receptor signaling pathway	tlr21	IDA		Zfish	PMID:22729906
Biological Process	GO:0043408	regulation of MAPK cascade	Tlr13	IGI	MGI:MGI:1346877	Mouse	PMID:21131352
Biological Process	GO:0009615	response to virus	Tlr13	IMP		Mouse	PMID:21131352
Biological Process	GO:0034178	toll-like receptor 13 signaling pathway	Tlr13	IDA		Mouse	MGI:MGI:5436353|PMID:22821982
Biological Process	GO:0034178	toll-like receptor 13 signaling pathway	Tlr13	IDA		Mouse	MGI:MGI:5447272|PMID:22896636
Biological Process	GO:0002224	toll-like receptor signaling pathway	tlr21	IDA		Zfish	PMID:24282308

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern