Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SDC2
  • Mouse genes Sdc2
  • Rat genes Sdc2
  • Zfish genes sdc2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sdc2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0042802	identical protein binding	SDC2	IPI	UniProtKB:P34741	Human	PMID:18093920
Molecular Function	GO:0042802	identical protein binding	SDC2	IPI	UniProtKB:P34741	Human	PMID:21988832
Molecular Function	GO:0042802	identical protein binding	Sdc2	IPI	UniProtKB:P34900	Rat	PMID:26601939|RGD:13825434
Molecular Function	GO:0030165	PDZ domain binding	SDC2	IPI	UniProtKB:O00560	Human	PMID:18256285
Molecular Function	GO:0030165	PDZ domain binding	Sdc2	IPI	RGD:62004	Rat	PMID:9660869|RGD:11576296
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:P21359	Human	PMID:11356864
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:O75056	Human	PMID:18093920
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:P18827	Human	PMID:18093920
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:P31431	Human	PMID:18093920
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:O00560	Human	PMID:22660413
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:Q8WUM4	Human	PMID:22660413
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:Q12797-6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:G5E9A7	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:O15354	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:O60333-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:O60506-4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:O60784-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:O76024	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:P27986-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:P28799	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:P28799-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:P41271-2	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:Q13387-4	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:Q6NXG1	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:Q7Z699	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:Q9Y3C5	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SDC2	IPI	UniProtKB:O14936	Human	PMID:9660868
Molecular Function	GO:0005515	protein binding	Sdc2	IPI	UniProtKB:Q9ES56	Mouse	MGI:MGI:1891560|PMID:11018053
Molecular Function	GO:0005515	protein binding	Sdc2	IPI	UniProtKB:Q6PDS3	Mouse	MGI:MGI:5007553|PMID:21555464
Molecular Function	GO:0005515	protein binding	Sdc2	IPI	UniProtKB:Q15113	Mouse	MGI:MGI:5787767|PMID:25286301
Molecular Function	GO:0005515	protein binding	Sdc2	IPI	RGD:3168	Rat	PMID:11356864|RGD:1599282
Molecular Function	GO:0005515	protein binding	Sdc2	IPI	UniProtKB:P33671	Rat	PMID:11356864|RGD:1599282
Molecular Function	GO:0005515	protein binding	Sdc2	IPI	UniProtKB:P26260	Rat	PMID:26601939|RGD:13825434
Molecular Function	GO:0005515	protein binding	Sdc2	IPI	UniProtKB:P33671	Rat	PMID:26601939|RGD:13825434
Molecular Function	GO:0005515	protein binding	Sdc2	IPI	UniProtKB:P34901	Rat	PMID:26601939|RGD:13825434
Cellular Component	GO:0062023	collagen-containing extracellular matrix	SDC2	HDA		Human	PMID:27068509
Cellular Component	GO:0043025	neuronal cell body	Sdc2	IDA		Rat	PMID:10460248|RGD:2311711
Cellular Component	GO:0005886	plasma membrane	SDC2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0045202	synapse	Sdc2	IDA		Rat	PMID:10460248|RGD:2311711
Cellular Component	GO:0045202	synapse	Sdc2	IDA		Rat	PMID:9660869|RGD:11576296
Biological Process	GO:0060973	cell migration involved in heart development	sdc2	IMP	ZFIN:ZDB-MRPHLNO-100513-2	Zfish	PMID:19700618
Biological Process	GO:0060973	cell migration involved in heart development	sdc2	IMP	ZFIN:ZDB-MRPHLNO-100513-1	Zfish	PMID:19700618
Biological Process	GO:0048813	dendrite morphogenesis	Sdc2	IEP		Rat	PMID:11580899|RGD:2311710
Biological Process	GO:0048565	digestive tract development	sdc2	IMP	ZFIN:ZDB-MRPHLNO-100513-1	Zfish	PMID:19700618
Biological Process	GO:0048565	digestive tract development	sdc2	IMP	ZFIN:ZDB-MRPHLNO-100513-2	Zfish	PMID:19700618
Biological Process	GO:0055113	epiboly involved in gastrulation with mouth forming second	sdc2	IMP	ZFIN:ZDB-MRPHLNO-120425-7	Zfish	PMID:22399807
Biological Process	GO:0070121	Kupffer's vesicle development	sdc2	IGI	ZFIN:ZDB-MRPHLNO-060111-5,ZFIN:ZDB-MRPHLNO-100513-2	Zfish	PMID:24046323
Biological Process	GO:0070121	Kupffer's vesicle development	sdc2	IMP	ZFIN:ZDB-MRPHLNO-100513-2	Zfish	PMID:24046323
Biological Process	GO:0048814	regulation of dendrite morphogenesis	Sdc2	IMP		Mouse	MGI:MGI:5007553|PMID:21555464
Biological Process	GO:0031000	response to caffeine	Sdc2	IEP		Rat	PMID:16458123|RGD:2311709
Biological Process	GO:0001666	response to hypoxia	Sdc2	IEP		Rat	PMID:18803305|RGD:2311708
Biological Process	GO:0002040	sprouting angiogenesis	sdc2	IMP	ZFIN:ZDB-MRPHLNO-060926-2	Zfish	PMID:14592839
Biological Process	GO:0002040	sprouting angiogenesis	sdc2	IMP	ZFIN:ZDB-MRPHLNO-060926-1	Zfish	PMID:14592839
Biological Process	GO:0002040	sprouting angiogenesis	sdc2	IMP	ZFIN:ZDB-MRPHLNO-060926-3	Zfish	PMID:14592839
Biological Process	GO:0097435	supramolecular fiber organization	sdc2	IMP	ZFIN:ZDB-MRPHLNO-100513-2	Zfish	PMID:19700618
Biological Process	GO:0097435	supramolecular fiber organization	sdc2	IMP	ZFIN:ZDB-MRPHLNO-100513-1	Zfish	PMID:19700618
Biological Process	GO:0042060	wound healing	Sdc2	IEP		Rat	PMID:12200974|RGD:1643138

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern