Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes HOXB3
  • Mouse genes Hoxb3
  • Rat genes Hoxb3
  • Zfish genes hoxb3a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Hoxb3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	HOXB3	IDA		Human	PMID:9556594
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	HOXB3	IDA		Human	PMID:7913891
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Hoxb3	IDA		Mouse	PMID:21320481
Cellular Component	GO:0005654	nucleoplasm	HOXB3	IDA		Human	GO_REF:0000052
Biological Process	GO:0001525	angiogenesis	HOXB3	IEP		Human	PMID:17972163
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96188	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96185	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96190	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96182	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96187	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96207	Mouse	PMID:9441667
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96183	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96186	Mouse	PMID:10885747
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96175	Mouse	PMID:9441667
Biological Process	GO:0009952	anterior/posterior pattern specification	Hoxb3	IGI	MGI:MGI:96189	Mouse	PMID:10885747
Biological Process	GO:0051216	cartilage development	Hoxb3	IGI	MGI:MGI:96207	Mouse	PMID:9441667
Biological Process	GO:0051216	cartilage development	Hoxb3	IGI	MGI:MGI:96175	Mouse	PMID:9441667
Biological Process	GO:0060216	definitive hemopoiesis	Hoxb3	IGI	MGI:MGI:96180	Mouse	PMID:17761289
Biological Process	GO:0060216	definitive hemopoiesis	Hoxb3	IGI	MGI:MGI:96185	Mouse	PMID:17761289
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96189	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96186	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96190	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96183	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96185	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96207	Mouse	PMID:9441667
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96188	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96175	Mouse	PMID:9441667
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96182	Mouse	PMID:10885747
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IMP	MGI:MGI:2151773	Mouse	PMID:9441667
Biological Process	GO:0048704	embryonic skeletal system morphogenesis	Hoxb3	IGI	MGI:MGI:96187	Mouse	PMID:10885747
Biological Process	GO:0060324	face development	Hoxb3	IDA		Mouse	PMID:21320481
Biological Process	GO:0021615	glossopharyngeal nerve morphogenesis	Hoxb3	IGI	MGI:MGI:96175	Mouse	PMID:9441667
Biological Process	GO:0021615	glossopharyngeal nerve morphogenesis	Hoxb3	IGI	MGI:MGI:96207	Mouse	PMID:9441667
Biological Process	GO:0002244	hematopoietic progenitor cell differentiation	Hoxb3	IMP		Mouse	PMID:24029230
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Hoxb3	IDA		Mouse	PMID:21320481
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	HOXB3	IDA		Human	PMID:9556594
Biological Process	GO:0050767	regulation of neurogenesis	Hoxb3	IDA		Mouse	PMID:21320481
Biological Process	GO:0021546	rhombomere development	Hoxb3	IDA		Mouse	PMID:21320481
Biological Process	GO:0030878	thyroid gland development	Hoxb3	IGI	MGI:MGI:96175	Mouse	PMID:9520319

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern