Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes FUBP1
  • Mouse genes Fubp1
  • Rat genes Fubp1
  • Zfish genes fubp1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Fubp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003730	mRNA 3'-UTR binding	fubp1	IDA		Zfish	PMID:31227602
Molecular Function	GO:0005515	protein binding	FUBP1	IPI	UniProtKB:Q13155	Human	PMID:21285945
Molecular Function	GO:0005515	protein binding	FUBP1	IPI	UniProtKB:Q9UPT9	Human	PMID:21779003
Molecular Function	GO:0005515	protein binding	FUBP1	IPI	UniProtKB:Q13155	Human	PMID:21988832
Molecular Function	GO:0005515	protein binding	Fubp1	IPI	PR:Q8R010	Mouse	PMID:12819782
Molecular Function	GO:0003723	RNA binding	FUBP1	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	FUBP1	HDA		Human	PMID:22681889
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Fubp1	IDA		Mouse	PMID:18836447
Cellular Component	GO:0005654	nucleoplasm	FUBP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	FUBP1	IDA		Human	PMID:19087307
Cellular Component	GO:0005634	nucleus	Fubp1	IDA		Rat	PMID:23939805|RGD:13673880
Cellular Component	GO:0045202	synapse	Fubp1	IDA		Mouse	PMID:16452087
Cellular Component	GO:0045202	synapse	Fubp1	EXP		Mouse	PMID:16452087
Biological Process	GO:0071222	cellular response to lipopolysaccharide	Fubp1	IEP		Rat	PMID:23797733|RGD:13673879
Biological Process	GO:0048588	developmental cell growth	Fubp1	IMP	MGI:MGI:4351702	Mouse	PMID:26095368
Biological Process	GO:0048588	developmental cell growth	Fubp1	IMP	MGI:MGI:4335984	Mouse	PMID:26095368
Biological Process	GO:0071425	hematopoietic stem cell proliferation	Fubp1	IMP	MGI:MGI:4351702	Mouse	PMID:26095368
Biological Process	GO:0071425	hematopoietic stem cell proliferation	Fubp1	IMP	MGI:MGI:4335984	Mouse	PMID:26095368
Biological Process	GO:0010628	positive regulation of gene expression	FUBP1	IDA		Human	PMID:19087307
Biological Process	GO:1900149	positive regulation of Schwann cell migration	Fubp1	IMP		Rat	PMID:23939805|RGD:13673880
Biological Process	GO:0010468	regulation of gene expression	fubp1	IGI	ZFIN:ZDB-MRPHLNO-060630-4,ZFIN:ZDB-MRPHLNO-161205-2	Zfish	PMID:26839368
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	Fubp1	IMP		Mouse	PMID:26095368
Biological Process	GO:0031667	response to nutrient levels	Fubp1	IEP		Rat	PMID:25943649|RGD:152995488
Biological Process	GO:0048103	somatic stem cell division	Fubp1	IMP	MGI:MGI:4335984	Mouse	PMID:26095368
Biological Process	GO:0048103	somatic stem cell division	Fubp1	IMP	MGI:MGI:4351702	Mouse	PMID:26095368

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern