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Phenotypes associated with this allele
Allele Symbol
Allele Name
Allele ID
Tcra+
wild type
MGI:3049848
Summary 14 genotypes
Jump to Allelic Composition Genetic Background Genotype ID
ht1
TcraLn3Jae/Tcra+ B6.Cg-TcraLn3Jae MGI:3834658
ht2
TcraLn1Ogu/Tcra+ involves: 129/Sv * C57BL/6 MGI:4356164
ht3
Tcratm1Mjo/Tcra+ NOD.129P2-Tcratm1Mjo MGI:4944217
ht4
Tcratm1Mjo/Tcra+ SJL.129P2-Tcratm1Mjo MGI:4944219
cn5
Tcratm1Mass/Tcra+
Tg(Nes-cre)Wme/0
involves: C57BL/6 * CBA MGI:5532668
cn6
Tcratm1Mass/Tcra+
Tg(Cd4-cre)1Cwi/0
involves: C57BL/6 * DBA/2 MGI:5532666
cx7
TcraLn3Jae/Tcra+
TcrbLn3Jae/Tcrb+
B6.Cg-TcrbLn3Jae TcraLn3Jae MGI:3834654
cx8
TcraLn1Ogu/Tcra+
TcrbLn1Ogu/Tcrb+
involves: 129/Sv * C57BL/6 MGI:4356144
cx9
TcraLn2Ogu/Tcra+
TcrbLn2Ogu/Tcrb+
involves: 129/Sv * C57BL/6 MGI:4356145
cx10
Del(3Cd1d2-Cd1d1)1Crw/Del(3Cd1d2-Cd1d1)1Crw
TcraLn1Ogu/Tcra+
involves: 129/Sv * C57BL/6 MGI:4356165
cx11
Tcratm1Mom/Tcra/Tcrdtm1.1(Tcra)Rsky
H2b/H2b
Tg(Tcrb)93Vbo/?
involves: 129P2/OlaHsd * C57BL/6J * DBA/2J MGI:3807222
cx12
Tcratm1Mom/Tcra/Tcrdtm1.1(Tcra)Rsky
H2d/H2d
Ptcratm1Vbo/Ptcratm1Vbo
Tg(Tcrb)93Vbo/?
involves: 129P2/OlaHsd * C57BL/6J * DBA/2J MGI:3807288
cx13
Rag2tm1Fwa/Rag2tm1Fwa
TcraLn3Jae/Tcra+
TcrbLn3Jae/Tcrb+
involves: 129S/SvEv * 129S4/SvJae * C57BL/6 MGI:3834655
cx14
Faslpr/Faslpr
Tcratm1Mjo/Tcra+
MRL.Cg-Tcratm1Mjo Faslpr MGI:4944218


Genotype
MGI:3834658
ht1
Allelic
Composition
TcraLn3Jae/Tcra+
Genetic
Background
B6.Cg-TcraLn3Jae
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
TcraLn3Jae mutation (0 available); any Tcra mutation (102 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• cellularity of the thymus is reduced by more than 5-fold
• there is a reduction in the percentage of thymocytes at DN1 and DN2 stages while there is a large increase in thymocytes at DN3 and DN4
• however, there is a large population of unusual double-negative thymocytes that are CD3+
• this double-negative CD3+ population is found abundantly in the spleen making up 31% of the splenocyte population
• there is about a 2-fold reduction in the percentage of double-positive thymocytes
• the percentage of CD4+ T cells in the spleen is reduced to less than a third of that in wild-type
• there is a 2-fold increase in the percentage of CD8+ single positive thymocytes

hematopoietic system
• cellularity of the thymus is reduced by more than 5-fold
• there is a reduction in the percentage of thymocytes at DN1 and DN2 stages while there is a large increase in thymocytes at DN3 and DN4
• however, there is a large population of unusual double-negative thymocytes that are CD3+
• this double-negative CD3+ population is found abundantly in the spleen making up 31% of the splenocyte population
• there is about a 2-fold reduction in the percentage of double-positive thymocytes
• the percentage of CD4+ T cells in the spleen is reduced to less than a third of that in wild-type
• there is a 2-fold increase in the percentage of CD8+ single positive thymocytes

endocrine/exocrine glands
• cellularity of the thymus is reduced by more than 5-fold




Genotype
MGI:4356164
ht2
Allelic
Composition
TcraLn1Ogu/Tcra+
Genetic
Background
involves: 129/Sv * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
TcraLn1Ogu mutation (0 available); any Tcra mutation (102 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• there are almost 10-fold lower thymocytes compared to controls
• the percentage of single-positive thymocytes is increased
• the percentage of double-positive thymocytes is decreased compared to controls
• some CD8-single positive NKT cells are found in the liver
• iNKT T cells have a bias towards expressing a receptor encoded in part by the TCRVbeta8 gene segment
• splenocyte numbers are almost cut in half
• IgG1 levels are increased about 5-fold
• IgG2a levels are decreased about 10-fold
• GM-CSF levels are more than 10-fold higher than controls 4 hours after alphaGalCer injection
• IFN-gamma levels are more than 10-fold higher than controls 4 hours after alphaGalCer injection
• increased IFN-gamma levels result from increased numbers of iNKT cells
• IL-10 levels are more than 10-fold higher than controls 4 hours after alphaGalCer injection
• IL-2 levels are more than 10-fold higher than controls 4 hours after alphaGalCer injection
• IL-4 levels are more than 10-fold higher than controls 4 hours after alphaGalCer injection
• increased IL-4 levels result from increased numbers of iNKT cells

liver/biliary system
• the number of lymphocytes in the liver is more than double of controls

hematopoietic system
• there are almost 10-fold lower thymocytes compared to controls
• the percentage of single-positive thymocytes is increased
• the percentage of double-positive thymocytes is decreased compared to controls
• some CD8-single positive NKT cells are found in the liver
• iNKT T cells have a bias towards expressing a receptor encoded in part by the TCRVbeta8 gene segment
• splenocyte numbers are almost cut in half
• IgG1 levels are increased about 5-fold
• IgG2a levels are decreased about 10-fold

endocrine/exocrine glands
• there are almost 10-fold lower thymocytes compared to controls




Genotype
MGI:4944217
ht3
Allelic
Composition
Tcratm1Mjo/Tcra+
Genetic
Background
NOD.129P2-Tcratm1Mjo
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Tcratm1Mjo mutation (7 available); any Tcra mutation (102 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• unlike in wild-type controls no dual TCRA expressing cells are present
• males and females are significantly protected from cyclophosphamide induced diabetes compared to wild-type controls
• marker analysis confirms that multiple susceptibility loci are entirely NOD derived

hematopoietic system
• unlike in wild-type controls no dual TCRA expressing cells are present




Genotype
MGI:4944219
ht4
Allelic
Composition
Tcratm1Mjo/Tcra+
Genetic
Background
SJL.129P2-Tcratm1Mjo
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Tcratm1Mjo mutation (7 available); any Tcra mutation (102 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
N
• no difference in the susceptibility to experimental autoimmune encephalomyelitis is detected compared to wild-type controls




Genotype
MGI:5532668
cn5
Allelic
Composition
Tcratm1Mass/Tcra+
Tg(Nes-cre)Wme/0
Genetic
Background
involves: C57BL/6 * CBA
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Tcratm1Mass mutation (0 available); any Tcra mutation (102 available)
Tg(Nes-cre)Wme mutation (0 available)
phenotype observed in females
phenotype observed in males
N normal phenotype



Genotype
MGI:5532666
cn6
Allelic
Composition
Tcratm1Mass/Tcra+
Tg(Cd4-cre)1Cwi/0
Genetic
Background
involves: C57BL/6 * DBA/2
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Tcratm1Mass mutation (0 available); any Tcra mutation (102 available)
Tg(Cd4-cre)1Cwi mutation (12 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• abnormal NK T cell maturation
• 23 times more in the thymus
• 43 times more in the spleen
• in mice treated with galactosylceramide

hematopoietic system
• abnormal NK T cell maturation
• 23 times more in the thymus
• 43 times more in the spleen
• in mice treated with galactosylceramide




Genotype
MGI:3834654
cx7
Allelic
Composition
TcraLn3Jae/Tcra+
TcrbLn3Jae/Tcrb+
Genetic
Background
B6.Cg-TcrbLn3Jae TcraLn3Jae
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
TcraLn3Jae mutation (0 available); any Tcra mutation (102 available)
TcrbLn3Jae mutation (0 available); any Tcrb mutation (98 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• cellularity of the thymus is reduced by about 4-fold
• the pre-arranged TCR genes are expressed abnormally early with intracellular TCR-beta chains detectable in the 75% of the common lymphoid progenitors in the bone marrow
• these TCR-beta chains were also detectable in 35% of multipotent progenitors, 12% of short-term hemopoietic stem cells, and 5% of long-term hemopoietic stem cells of the bone marrow
• there is a severe reduction in the percentage of thymocytes at the DN1-3 stages
• however, there is a large population of unusual double-negative thymocytes that are CD3+
• this double-negative CD3+ population is rarely found in the spleen
• there is a greater than 4-fold reduction in the percentage of double-positive thymocytes
• the double-positive thymus makes up 83% of the normal thymus but only 16% in these mutants
• the percentage of CD4+ T cells in the spleen is reduced to less than a third of that in wild-type
• there is a 10-fold increase in the percentage of CD8+ single positive thymocytes
• the percentage of CD8+ T cells among splenocytes is more than double that of controls
• gamma-delta T cells are virtually absent in these mice

hematopoietic system
• cellularity of the thymus is reduced by about 4-fold
• the pre-arranged TCR genes are expressed abnormally early with intracellular TCR-beta chains detectable in the 75% of the common lymphoid progenitors in the bone marrow
• these TCR-beta chains were also detectable in 35% of multipotent progenitors, 12% of short-term hemopoietic stem cells, and 5% of long-term hemopoietic stem cells of the bone marrow
• there is a severe reduction in the percentage of thymocytes at the DN1-3 stages
• however, there is a large population of unusual double-negative thymocytes that are CD3+
• this double-negative CD3+ population is rarely found in the spleen
• there is a greater than 4-fold reduction in the percentage of double-positive thymocytes
• the double-positive thymus makes up 83% of the normal thymus but only 16% in these mutants
• the percentage of CD4+ T cells in the spleen is reduced to less than a third of that in wild-type
• there is a 10-fold increase in the percentage of CD8+ single positive thymocytes
• the percentage of CD8+ T cells among splenocytes is more than double that of controls
• gamma-delta T cells are virtually absent in these mice

endocrine/exocrine glands
• cellularity of the thymus is reduced by about 4-fold




Genotype
MGI:4356144
cx8
Allelic
Composition
TcraLn1Ogu/Tcra+
TcrbLn1Ogu/Tcrb+
Genetic
Background
involves: 129/Sv * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
TcraLn1Ogu mutation (0 available); any Tcra mutation (102 available)
TcrbLn1Ogu mutation (0 available); any Tcrb mutation (98 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
growth/size/body
• mice are heavier than controls

immune system
• all T cell express the Vbeta8 gene segment compared to just 20% in controls

hematopoietic system
• all T cell express the Vbeta8 gene segment compared to just 20% in controls




Genotype
MGI:4356145
cx9
Allelic
Composition
TcraLn2Ogu/Tcra+
TcrbLn2Ogu/Tcrb+
Genetic
Background
involves: 129/Sv * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
TcraLn2Ogu mutation (0 available); any Tcra mutation (102 available)
TcrbLn2Ogu mutation (0 available); any Tcrb mutation (98 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
growth/size/body
• mice are heavier than controls

immune system
• all T cell express the Vbeta8 gene segment compared to just 20% in controls

hematopoietic system
• all T cell express the Vbeta8 gene segment compared to just 20% in controls




Genotype
MGI:4356165
cx10
Allelic
Composition
Del(3Cd1d2-Cd1d1)1Crw/Del(3Cd1d2-Cd1d1)1Crw
TcraLn1Ogu/Tcra+
Genetic
Background
involves: 129/Sv * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Del(3Cd1d2-Cd1d1)1Crw mutation (0 available); any Del(3Cd1d2-Cd1d1)1Crw mutation (0 available)
TcraLn1Ogu mutation (0 available); any Tcra mutation (102 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• less invariant NKT cells mature in the thymus as determined by binding to CD1d tetramers
• immature iNKT cells that are CD24+CD44dullNK1.1- are very abundant in the thymus

hematopoietic system
• less invariant NKT cells mature in the thymus as determined by binding to CD1d tetramers
• immature iNKT cells that are CD24+CD44dullNK1.1- are very abundant in the thymus




Genotype
MGI:3807222
cx11
Allelic
Composition
Tcratm1Mom/Tcra/Tcrdtm1.1(Tcra)Rsky
H2b/H2b
Tg(Tcrb)93Vbo/?
Genetic
Background
involves: 129P2/OlaHsd * C57BL/6J * DBA/2J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
H2b mutation (34 available); any H2 mutation (304 available)
Tcra/Tcrdtm1.1(Tcra)Rsky mutation (0 available); any Tcrd mutation (16 available)
Tcratm1Mom mutation (8 available); any Tcra mutation (102 available)
Tg(Tcrb)93Vbo mutation (1 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
hematopoietic system
• 18% of lymph node T cells from female mice bearing H2-Db express the HY-alpha t cell receptor chain
• the majority of T cells in male mice are HYalpha+ CD4-CD8lo or HYalpha+ CD4-CD8-
• 5 of 29 HY- thymocytes from H2-Db background mice have some receptor editing though the small number of DP and SP thymocytes present suggests this process is inefficient
• thymocytes from male mice on a H2-Db background that express the HY receptor are CD69+ and undergoing apoptosis due to negative selection
• DN thymocytes of both sexes have premature expression of a T cell receptor (TCR)
• this TCR is specific for the male HY antigen and in many cases there is co-expression of CD25 and CD44
• the percentage of DN cells in the thymus is increased
• female mice on a H2-Db background have almost double the number of DP thymocytes compared to female mice carrying just the Tcrbeta transgene
• the majority of these DP thymocytes do not carry the HY TCR
• male mice on a H2-Db background have 4% the number of double positive thymocytes

immune system
• 18% of lymph node T cells from female mice bearing H2-Db express the HY-alpha t cell receptor chain
• the majority of T cells in male mice are HYalpha+ CD4-CD8lo or HYalpha+ CD4-CD8-
• 5 of 29 HY- thymocytes from H2-Db background mice have some receptor editing though the small number of DP and SP thymocytes present suggests this process is inefficient
• thymocytes from male mice on a H2-Db background that express the HY receptor are CD69+ and undergoing apoptosis due to negative selection
• DN thymocytes of both sexes have premature expression of a T cell receptor (TCR)
• this TCR is specific for the male HY antigen and in many cases there is co-expression of CD25 and CD44
• the percentage of DN cells in the thymus is increased
• female mice on a H2-Db background have almost double the number of DP thymocytes compared to female mice carrying just the Tcrbeta transgene
• the majority of these DP thymocytes do not carry the HY TCR
• male mice on a H2-Db background have 4% the number of double positive thymocytes

endocrine/exocrine glands




Genotype
MGI:3807288
cx12
Allelic
Composition
Tcratm1Mom/Tcra/Tcrdtm1.1(Tcra)Rsky
H2d/H2d
Ptcratm1Vbo/Ptcratm1Vbo
Tg(Tcrb)93Vbo/?
Genetic
Background
involves: 129P2/OlaHsd * C57BL/6J * DBA/2J
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
H2d mutation (24 available); any H2 mutation (304 available)
Ptcratm1Vbo mutation (0 available); any Ptcra mutation (12 available)
Tcra/Tcrdtm1.1(Tcra)Rsky mutation (0 available); any Tcrd mutation (16 available)
Tcratm1Mom mutation (8 available); any Tcra mutation (102 available)
Tg(Tcrb)93Vbo mutation (1 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
hematopoietic system
• thymocyte numbers are reduced by about 3-fold
• the presence of HY TCR alleviates the beta-selection block in Ptcratm1Vbo homozygotes with higher T cell numbers being found in the thymus and the spleen
• despite the increased numbers of thymocytes, the CD25+ thymocyte sub-population still remains very low

immune system
• thymocyte numbers are reduced by about 3-fold
• the presence of HY TCR alleviates the beta-selection block in Ptcratm1Vbo homozygotes with higher T cell numbers being found in the thymus and the spleen
• despite the increased numbers of thymocytes, the CD25+ thymocyte sub-population still remains very low

endocrine/exocrine glands
• thymocyte numbers are reduced by about 3-fold




Genotype
MGI:3834655
cx13
Allelic
Composition
Rag2tm1Fwa/Rag2tm1Fwa
TcraLn3Jae/Tcra+
TcrbLn3Jae/Tcrb+
Genetic
Background
involves: 129S/SvEv * 129S4/SvJae * C57BL/6
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Rag2tm1Fwa mutation (46 available); any Rag2 mutation (121 available)
TcraLn3Jae mutation (0 available); any Tcra mutation (102 available)
TcrbLn3Jae mutation (0 available); any Tcrb mutation (98 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
• there is a reduction in the percentage of thymocytes at DN1 and DN2 stages while there is a large increase in thymocytes at DN3 and DN4
• CD4+ T cells make up less than 1% of the splenocyte population
• 99% of T cells in the spleen are CD8+ T cells
• 46% of thymocytes are single-positive CD8+ cells
• gamma-delta T cells are absent in these mice

hematopoietic system
• there is a reduction in the percentage of thymocytes at DN1 and DN2 stages while there is a large increase in thymocytes at DN3 and DN4
• CD4+ T cells make up less than 1% of the splenocyte population
• 99% of T cells in the spleen are CD8+ T cells
• 46% of thymocytes are single-positive CD8+ cells
• gamma-delta T cells are absent in these mice




Genotype
MGI:4944218
cx14
Allelic
Composition
Faslpr/Faslpr
Tcratm1Mjo/Tcra+
Genetic
Background
MRL.Cg-Tcratm1Mjo Faslpr
Find Mice Using the International Mouse Strain Resource (IMSR)
Mouse lines carrying:
Faslpr mutation (39 available); any Fas mutation (82 available)
Tcratm1Mjo mutation (7 available); any Tcra mutation (102 available)
phenotype observed in females
phenotype observed in males
N normal phenotype
immune system
N
• no difference in the susceptibility to systemic lupus erythematosus is detected compared to wild-type controls





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last database update
03/18/2025
MGI 6.24
The Jackson Laboratory