Slc1a3
Gene Detail

Symbol Name ID

Slc1a3 solute carrier family 1 (glial high affinity glutamate transporter), member 3 MGI:99917

Synonyms

B430115D02Rik, Eaat1, GLAST, Gmt1, MGluT1

Feature Type

protein coding gene

Genetic Map

Chromosome 15

3.82 cM, cytoband A2
Detailed Genetic Map ± 1 cM


Mapping data(8)

Sequence Map

Chr15:8634124-8710764 bp, - strand From VEGA annotation of GRCm38   76641 bp   ±  kb flank VEGA Genome Browser | Ensembl Genome Browser | UCSC Browser | NCBI Map Viewer

Mouse Genome Browser

Vertebrate homology

HomoloGene:20882  Vertebrate Homology Class
1 human; 1 mouse; 1 rat; 1 chimpanzee; 1 rhesus macaque; 1 dog; 1 chicken; 2 zebrafish

Protein SuperFamily: glutamate/aspartate transport protein
Gene Tree: Slc1a3

Human homologs

Human Homolog		SLC1A3, solute carrier family 1 (glial high affinity glutamate transporter), member 3
NCBI Gene ID		6507
neXtProt AC		NX_P43003
Human Synonyms		EA6, EAAT1, GLAST, GLAST1
Human Chr (Location)		5p13; chr5:36606457-36688436 (+)  GRCh37.p10
Disease Associations		(1) Diseases Associated with Human SLC1A3

Alleles and phenotypes

All alleles(48) : Targeted(9) Gene trapped(39)
 

Mice homozygous for disruptions in this gene display no abnormalities with respect to appearance or survival but do display functional abnormalities related to the central nervous system.

 
Human Diseases Modeled Using Mouse Slc1a3 (1)    Alleles Annotated to Human Diseases(1)   

Gene Ontology (GO) classifications

All GO classifications: (51 annotations)

Process	amino acid transmembrane transport, auditory behavior, ...
Component	basolateral plasma membrane, cell projection, ...
Function	amino acid binding, glutamate binding, ...

This is a GO Consortium Reference Genome Project gene.
External Resources: FuncBase

Expression

Literature Summary: (96 records)
Data Summary: Results (439)    Tissues (162)    Images (36)
Theiler Stages: 18, 19, 20, 21, 22, 23, 24, 25, 26, 28

Assay Type	Results
Immunohistochemistry	16
RNA in situ	409
RT-PCR	14

cDNA source data(24)
External Resources: Allen Institute   GENSAT   GEO   ArrayExpress

Molecular reagents

All nucleic(36) Genomic(6) cDNA(25) Primer pair(4) Other(1)
Microarray probesets(9)

Other database links

VEGA Gene Model	OTTMUSG00000032639 (Evidence)
Ensembl Gene Model	ENSMUSG00000005360 (Evidence)
Entrez Gene	20512 (Evidence)
DFCI	TC1573171, TC1609278, TC1613605, TC1621047, TC1679313, TC1711423, TC1713450
DoTS	DT.101230680, DT.101352520, DT.101738910, DT.110794584, DT.526331, DT.91315632, DT.91338536, DT.94270271
NIA Mouse Gene Index	U043878
Consensus CDS Project	CCDS27373.1
International Mouse Knockout Project Status	Slc1a3

Sequences

Length	Strain/Species
genomic	OTTMUSG00000032639	VEGA Gene Model | MGI Sequence Detail	76641	C57BL/6J
transcript	OTTMUST00000081197	VEGA | MGI Sequence Detail	4163	Not Applicable
polypeptide	OTTMUSP00000043391	VEGA | MGI Sequence Detail	543	Not Applicable

All sequences(78) RefSeq(2) UniProt(6)

Polymorphisms

RFLP(1) : SNPs within 2kb(291 from dbSNP Build 137)

Protein-related information

Resource	ID	Description
InterPro	IPR001991	Sodium:dicarboxylate symporter
InterPro	IPR018107	Sodium:dicarboxylate symporter, conserved site
Protein Ontology	PR:000014974	excitatory amino acid transporter 1

References

(Earliest) J:16962 Tanaka K, Cloning and expression of a glutamate transporter from mouse brain. Neurosci Lett. 1993 Sep 3;159(1-2):183-6
(Latest) J:201894 Ninkovic J, et al., The BAF Complex Interacts with Pax6 in Adult Neural Progenitors to Establish a Neurogenic Cross-Regulatory Transcriptional Network. Cell Stem Cell. 2013 Oct 3;13(4):403-18
All references(197)

Other accession IDs

MGD-MRK-16014, MGD-MRK-16274, MGD-MRK-16718, MGI:2146029, MGI:2444735